Expression of 1-1-8.3.15.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0897 | 0.709 |
27DAP/17DAP | 1.31422 | 0.799 |
39DAP/27DAP | 0.91738 | 0.631 |
41DAP/39DAP | 1.3114 | 0.286 |
42DAP/41DAP | 1.13171 | 0.962 |
43DAP/42DAP | 1.14267 | 1 |
47DAP/43DAP | 1.17662 | 0.889 |
52DAP/47DAP | 1.94282 | 0.24 |
57DAP/52DAP | 0.90457 | 0.803 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92187 | 0.231 |
17DAP/reference | 0.94048 | 0.194 |
27DAP/reference | 0.99014 | 0.725 |
39DAP/reference | 0.98553 | 0.704 |
41DAP/reference | 0.85893 | 0.085 |
42DAP/reference | 0.89312 | 0.007 |
43DAP/reference | 0.9921 | 0.82 |
47DAP/reference | 0.90188 | 0.035 |
52DAP/reference | 1.00743 | 1 |
57DAP/reference | 1.03492 | 0.366 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88125 | 0.402 |
27DAP/17DAP | 0.95399 | 0.821 |
39DAP/27DAP | 1.05984 | 0.691 |
41DAP/39DAP | 1.05154 | 1 |
42DAP/41DAP | 1.04699 | 1 |
43DAP/42DAP | 0.98884 | 0.875 |
47DAP/43DAP | 1.09533 | 0.63 |
52DAP/47DAP | 0.99955 | 0.935 |
57DAP/52DAP | 0.929 | 0.612 |
57DAP/7DAP | 1.2331 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08622 | 0.452 |
17DAP/reference | 1.54468 | 0.006 |
27DAP/reference | 1.40169 | 0.009 |
39DAP/reference | 1.56537 | 0.005 |
41DAP/reference | 1.53083 | 0.013 |
42DAP/reference | 1.66274 | 0.007 |
43DAP/reference | 1.81369 | 0.011 |
47DAP/reference | 1.29432 | 0.298 |
52DAP/reference | 1.44549 | 0.007 |
57DAP/reference | 1.37654 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97249 | 0.688 |
17DAP/reference | 0.94531 | 0.208 |
27DAP/reference | 0.9189 | 0.327 |
39DAP/reference | 0.89102 | 0.178 |
41DAP/reference | 0.89925 | 0.188 |
42DAP/reference | 0.8633 | 0.027 |
43DAP/reference | 0.91803 | 0.404 |
47DAP/reference | 0.97048 | 0.446 |
52DAP/reference | 0.97542 | 0.469 |
57DAP/reference | 1.04491 | 0.724 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09679 | 0.311 |
17DAP/reference | 1.20937 | 0.42 |
27DAP/reference | 1.60121 | 0.017 |
39DAP/reference | 1.56901 | 0.015 |
41DAP/reference | 1.38678 | 0.025 |
42DAP/reference | 1.29799 | 0.086 |
43DAP/reference | 1.20133 | 0.7 |
47DAP/reference | 1.00819 | 0.754 |
52DAP/reference | 1.55872 | 0.155 |
57DAP/reference | 1.08744 | 0.828 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99665 | 1 |
26DAP/20DAP | 0.8757 | 0.317 |
34DAP/26DAP | 1.13459 | 1 |
51DAP/34DAP | 0.94135 | 0.698 |
52DAP/51DAP | 1.08563 | 0.704 |
53DAP/52DAP | 1.22713 | 0.274 |
55DAP/53DAP | 1.12254 | 0.566 |
57DAP/55DAP | 0.85761 | 0.259 |
62DAP/57DAP | 1.2041 | 0.622 |
68DAP/62DAP | 0.69089 | 0.177 |
68DAP/14DAP | 0.76157 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89418 | 0.211 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.81053 | 0.107 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.36155 | |
Mature Eggplant/Ripe Tomato | 1.2567 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.09143 | 1 |
1-1-2/M82 | 0.99681 | 1 |
12-2/M82 | 1.31716 | 1 |
12-4/M82 | 0.94817 | 1 |
1-3/M82 | 0.81645 | 0.501 |
2-1-1/M82 | 1.26826 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.05901 | 0.405 |
3-2/M82 | 0.79751 | |
4-1-1/M82 | 1.04282 | 1 |
4-1/M82 | 1.25051 | |
4-3-2/M82 | 0.98248 | 1 |
4-3/M82 | 0.89924 | 1 |
5-3/M82 | 0.98256 | 1 |
6-2/M82 | 0.81457 | 0.497 |
6-3/M82 | 1.0859 | 1 |
7-1/M82 | 1.08289 | |
7-2/M82 | 1.05718 | 1 |
9-3-2/M82 | 0.79686 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.05485 | 0.456 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.05108 | 1 |
IL12-4/WTpooled | 1.93158 | |
IL1-4/WTpooled | 1.01358 | 1 |
WT/WTpooled | 0.9983 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.07449 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04474 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.25701 | 1 |
DC3000/delta hrp 24h | 1.08889 | 0.582 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.0511 | 0.694 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.35081 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.986 | 1 |
Var 0h | 1.0229 | 1 |
Var 12h I row2-row1 | 1.03473 | 0.736 |
Var 12h NI row2-row1 | 0.9196 | 0.466 |
Var 36h I row2-row1 | 0.76093 | 1 |
Var 36h NI row2-row1 | 0.83472 | 0.549 |
Var 60h I row2-row1 | 1.84822 | 0.562 |
Var 60h NI row2-row1 | 1.24528 | 0.904 |
Time course 0hI-0hNI | 1.16194 | 0.719 |
Time course 12hI-12hNI | 1.07908 | 0.734 |
Time course 36hI-36hNI | 0.9182 | 0.198 |
Time course 60hI-60hNI | 1.3412 | 0.042 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99082 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.84749 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.95369 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01683 | 0.213 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.76612 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.65287 | 0.172 |
Manapal/WT (break) | 0.71647 | 0.333 |
Manapal/WT (red) | 0.92501 | 0.607 |
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