Expression of 1-1-8.3.15.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.08970.709
27DAP/17DAP1.314220.799
39DAP/27DAP0.917380.631
41DAP/39DAP1.31140.286
42DAP/41DAP1.131710.962
43DAP/42DAP1.142671
47DAP/43DAP1.176620.889
52DAP/47DAP1.942820.24
57DAP/52DAP0.904570.803

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.921870.231
17DAP/reference0.940480.194
27DAP/reference0.990140.725
39DAP/reference0.985530.704
41DAP/reference0.858930.085
42DAP/reference0.893120.007
43DAP/reference0.99210.82
47DAP/reference0.901880.035
52DAP/reference1.007431
57DAP/reference1.034920.366

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.881250.402
27DAP/17DAP0.953990.821
39DAP/27DAP1.059840.691
41DAP/39DAP1.051541
42DAP/41DAP1.046991
43DAP/42DAP0.988840.875
47DAP/43DAP1.095330.63
52DAP/47DAP0.999550.935
57DAP/52DAP0.9290.612
57DAP/7DAP1.23311

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.086220.452
17DAP/reference1.544680.006
27DAP/reference1.401690.009
39DAP/reference1.565370.005
41DAP/reference1.530830.013
42DAP/reference1.662740.007
43DAP/reference1.813690.011
47DAP/reference1.294320.298
52DAP/reference1.445490.007
57DAP/reference1.376540.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.972490.688
17DAP/reference0.945310.208
27DAP/reference0.91890.327
39DAP/reference0.891020.178
41DAP/reference0.899250.188
42DAP/reference0.86330.027
43DAP/reference0.918030.404
47DAP/reference0.970480.446
52DAP/reference0.975420.469
57DAP/reference1.044910.724

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.096790.311
17DAP/reference1.209370.42
27DAP/reference1.601210.017
39DAP/reference1.569010.015
41DAP/reference1.386780.025
42DAP/reference1.297990.086
43DAP/reference1.201330.7
47DAP/reference1.008190.754
52DAP/reference1.558720.155
57DAP/reference1.087440.828

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.996651
26DAP/20DAP0.87570.317
34DAP/26DAP1.134591
51DAP/34DAP0.941350.698
52DAP/51DAP1.085630.704
53DAP/52DAP1.227130.274
55DAP/53DAP1.122540.566
57DAP/55DAP0.857610.259
62DAP/57DAP1.20410.622
68DAP/62DAP0.690890.177
68DAP/14DAP0.761570.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.894180.211

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.810530.107
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.36155
Mature Eggplant/Ripe Tomato1.2567

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.091431
1-1-2/M820.996811
12-2/M821.317161
12-4/M820.948171
1-3/M820.816450.501
2-1-1/M821.26826
2-1/M82N/AN/A
2-6/M821.059010.405
3-2/M820.79751
4-1-1/M821.042821
4-1/M821.25051
4-3-2/M820.982481
4-3/M820.899241
5-3/M820.982561
6-2/M820.814570.497
6-3/M821.08591
7-1/M821.08289
7-2/M821.057181
9-3-2/M820.796860.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.054850.456
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.051081
IL12-4/WTpooled1.93158
IL1-4/WTpooled1.013581
WT/WTpooled0.99831

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.074491

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.044740.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.257011
DC3000/delta hrp 24h1.088890.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.05110.694

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.350810.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.9861
Var 0h1.02291
Var 12h I row2-row11.034730.736
Var 12h NI row2-row10.91960.466
Var 36h I row2-row10.760931
Var 36h NI row2-row10.834720.549
Var 60h I row2-row11.848220.562
Var 60h NI row2-row11.245280.904
Time course 0hI-0hNI1.161940.719
Time course 12hI-12hNI1.079080.734
Time course 36hI-36hNI0.91820.198
Time course 60hI-60hNI1.34120.042

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.990820.862
transgenic ySAMdc/azygous control (breaker)0.847490.173
transgenic ySAMdc/azygous control (red)0.953691

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.016830.213

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.766120.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.652870.172
Manapal/WT (break)0.716470.333
Manapal/WT (red)0.925010.607