Expression of 1-1-8.3.16.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.933420.596
27DAP/17DAP0.884610.72
39DAP/27DAP1.358450.272
41DAP/39DAP0.920670.655
42DAP/41DAP0.955621
43DAP/42DAP0.926240.841
47DAP/43DAP0.993630.902
52DAP/47DAP1.198480.724
57DAP/52DAP0.962080.947

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.556240.009
17DAP/reference1.07990.161
27DAP/reference1.093410.093
39DAP/reference1.051450.294
41DAP/reference1.359130.014
42DAP/reference1.355930.001
43DAP/reference1.069470.678
47DAP/reference1.18030.006
52DAP/reference1.412530.021
57DAP/reference1.095730.529

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.98410.782
27DAP/17DAP1.010910.969
39DAP/27DAP0.977840.812
41DAP/39DAP1.058460.705
42DAP/41DAP1.061770.559
43DAP/42DAP0.961660.503
47DAP/43DAP0.995270.989
52DAP/47DAP0.994780.97
57DAP/52DAP1.074520.571
57DAP/7DAP1.141430.23

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.003581
17DAP/reference0.918190.056
27DAP/reference0.810720.026
39DAP/reference0.785210.014
41DAP/reference0.834320.038
42DAP/reference0.766780.01
43DAP/reference0.726360.011
47DAP/reference0.994070.671
52DAP/reference0.893060.049
57DAP/reference0.893750.026

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.494270.116
17DAP/reference2.072520.009
27DAP/reference1.593170.03
39DAP/reference1.479080.016
41DAP/reference1.678510.012
42DAP/reference1.423380.096
43DAP/reference1.549140.077
47DAP/reference1.299230.022
52DAP/reference1.321140.009
57DAP/reference1.353260.029

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.833680.061
17DAP/reference0.996540.751
27DAP/reference0.808470.041
39DAP/reference0.836270.046
41DAP/reference0.94940.331
42DAP/reference1.200490.943
43DAP/reference1.117780.867
47DAP/reference1.238740.519
52DAP/reference0.870610.351
57DAP/reference1.14770.144

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.891460.997
26DAP/20DAP1.058250.727
34DAP/26DAP0.985760.988
51DAP/34DAP0.940460.449
52DAP/51DAP1.005540.925
53DAP/52DAP1.2493
55DAP/53DAP0.91996
57DAP/55DAP0.985770.909
62DAP/57DAP0.900680.681
68DAP/62DAP0.744620.211
68DAP/14DAP0.960471

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.191690.113

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.80940.261
Mature Green Tomato/Ripe Tomato1.346910.106
Immature Eggplant/Mature Eggplant0.95460.651
Ripe Pepper/Ripe Tomato0.918771
Mature Eggplant/Ripe Tomato0.749871

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.078430.877
1-1-2/M821.15920.977
12-2/M821.060121
12-4/M821.037311
1-3/M82N/AN/A
2-1-1/M821.13364
2-1/M820.78561
2-6/M820.9953
3-2/M821.029331
4-1-1/M820.990921
4-1/M821.079941
4-3-2/M820.799050.698
4-3/M821.025920.268
5-3/M821.126811
6-2/M820.986161
6-3/M821.009291
7-1/M821.078571
7-2/M821.081311
9-3-2/M821.072691

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.873650.321
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.854231
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.845410.699
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.179510.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.997811
DC3000/delta hrp 6h1.010810.95
DC3000/delta hrp 12h1.262381
DC3000/delta hrp 24h0.846840.148

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.264110.042
DC3000 delta B/DC3000 delta AB1.29150.092

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.972121
Exp 36h1.071331
Exp 60h1.143920.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.921961
Var 0h0.492130.457
Var 12h I row2-row11.010130.795
Var 12h NI row2-row11.137330.649
Var 36h I row2-row11.129120.41
Var 36h NI row2-row10.859150.469
Var 60h I row2-row10.914690.582
Var 60h NI row2-row10.935360.69
Time course 0hI-0hNI1.044750.537
Time course 12hI-12hNI1.056910.567
Time course 36hI-36hNI1.323820.006
Time course 60hI-60hNI1.961290.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.069460.431
transgenic ySAMdc/azygous control (breaker)1.190891
transgenic ySAMdc/azygous control (red)1.177890.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.930650.237

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.873440.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.04951
Manapal/WT (break)0.791771
Manapal/WT (red)1.942230.222