Expression of 1-1-8.3.17.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.444510.166
27DAP/17DAP1.105990.849
39DAP/27DAP1.099290.888
41DAP/39DAP0.891420.611
42DAP/41DAP1.149120.841
43DAP/42DAP1.031810.937
47DAP/43DAP1.676030.246
52DAP/47DAP1.388270.451
57DAP/52DAP1.245730.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.350960.207
17DAP/reference0.791440.025
27DAP/reference1.252970.093
39DAP/reference0.909040.124
41DAP/reference0.91730.341
42DAP/reference1.366310.264
43DAP/reference1.182170.202
47DAP/reference1.267590.495
52DAP/reference2.187550.023
57DAP/reference1.843750.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.956190.716
27DAP/17DAP1.347910.453
39DAP/27DAP0.962560.768
41DAP/39DAP0.70520.68
42DAP/41DAP1.084811
43DAP/42DAP1.194370.699
47DAP/43DAP0.832330.466
52DAP/47DAP1.466290.382
57DAP/52DAP1.211020.708
57DAP/7DAP1.226061

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.798060.052
17DAP/reference0.834870.072
27DAP/reference0.855050.076
39DAP/reference0.680490.027
41DAP/reference0.705810.098
42DAP/reference0.62740.013
43DAP/reference0.857880.121
47DAP/reference1.342530.353
52DAP/reference0.757560.027
57DAP/reference0.982390.549

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.840570.17
17DAP/reference0.859340.113
27DAP/reference1.146381
39DAP/reference1.412610.043
41DAP/reference1.828040.008
42DAP/reference1.510280.007
43DAP/reference0.804490.191
47DAP/reference0.99680.66
52DAP/reference1.384850.008
57DAP/reference0.866510.063

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.804140.135
17DAP/reference0.968330.56
27DAP/reference0.99910.805
39DAP/reference0.913980.299
41DAP/reference0.907690.209
42DAP/reference1.706780.382
43DAP/reference1.430260.439
47DAP/reference1.43980.355
52DAP/reference0.845940.327
57DAP/reference2.707370.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.047061
26DAP/20DAP0.808670.183
34DAP/26DAP0.453670.214
51DAP/34DAP1.25907
52DAP/51DAP1.28435
53DAP/52DAP1.84170.212
55DAP/53DAP1.192560.991
57DAP/55DAP0.84130.539
62DAP/57DAP1.612140.723
68DAP/62DAP5.273930.011
68DAP/14DAP4.650560.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.307440.077

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.180670.752
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.08607
Mature Eggplant/Ripe Tomato2.190310.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.55578
1-1-2/M821.047421
12-2/M82N/AN/A
12-4/M821.090381
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.052721
4-3/M82N/AN/A
5-3/M821.287670.426
6-2/M82N/AN/A
6-3/M821.45994
7-1/M82N/AN/A
7-2/M820.71601
9-3-2/M820.86598

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.96419
IL2-6/WTpooled0.981761
IL7-5/WTpooled0.77811
IL7-3/WTpooled0.952091
IL12-4/WTpooled1.093530.785
IL1-4/WTpooled0.985770.834
WT/WTpooled1.132670.686

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.78516

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.885580.697
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h1.019931

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.871071
Var 0h1.350240.259
Var 12h I row2-row10.86170.39
Var 12h NI row2-row10.94230.906
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row10.885720.743
Var 60h I row2-row10.955370.952
Var 60h NI row2-row11.38671
Time course 0hI-0hNI1.041370.833
Time course 12hI-12hNI0.80725
Time course 36hI-36hNI1.220070.004
Time course 60hI-60hNI0.913151

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.655930.931
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.052461

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.735421
Manapal/WT (red)1.39270.222