Expression of 1-1-8.3.18.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.743810.096
27DAP/17DAP1.01750.926
39DAP/27DAP0.940860.67
41DAP/39DAP1.054790.696
42DAP/41DAP0.991161
43DAP/42DAP0.906150.813
47DAP/43DAP1.008920.953
52DAP/47DAP0.953090.821
57DAP/52DAP1.013540.987

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.891340.246
17DAP/reference0.873620.169
27DAP/reference1.037550.82
39DAP/reference1.209830.016
41DAP/reference0.961310.542
42DAP/reference1.003250.707
43DAP/reference1.01710.899
47DAP/reference1.274210.04
52DAP/reference1.287270.031
57DAP/reference1.305370.012

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.356590.414
27DAP/17DAP1.688290.023
39DAP/27DAP0.927670.247
41DAP/39DAP1.109340.895
42DAP/41DAP1.065580.999
43DAP/42DAP1.316770.03
47DAP/43DAP0.911620.31
52DAP/47DAP1.336330.338
57DAP/52DAP0.917490.505
57DAP/7DAP1.033341

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.299120.037
17DAP/reference1.85940.007
27DAP/reference1.730130.009
39DAP/reference1.763140.006
41DAP/reference1.881220.013
42DAP/reference1.982430.006
43DAP/reference2.738180.006
47DAP/reference1.868080.027
52DAP/reference1.987970.008
57DAP/reference2.312160.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.800950.14
17DAP/reference0.973320.523
27DAP/reference1.038070.875
39DAP/reference1.060970.556
41DAP/reference0.954810.291
42DAP/reference1.021121
43DAP/reference1.056630.761
47DAP/reference1.127310.225
52DAP/reference1.276120.006
57DAP/reference1.183970.166

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.139580.212
17DAP/reference1.194260.431
27DAP/reference2.086450.016
39DAP/reference1.881540.007
41DAP/reference1.42950.017
42DAP/reference1.638220.012
43DAP/reference1.834810.024
47DAP/reference0.966250.296
52DAP/reference1.512840.11
57DAP/reference1.289550.09

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.513910.631
26DAP/20DAP1.448181
34DAP/26DAP1.692020.542
51DAP/34DAP0.579440.069
52DAP/51DAP1.665640.039
53DAP/52DAP0.928240.835
55DAP/53DAP1.181150.989
57DAP/55DAP1.006910.891
62DAP/57DAP0.968420.994
68DAP/62DAP1.061511
68DAP/14DAP1.211590.762

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.44220.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.66860.168
Mature Green Tomato/Ripe Tomato0.906620.347
Immature Eggplant/Mature Eggplant1.044170.507
Ripe Pepper/Ripe Tomato0.844780.293
Mature Eggplant/Ripe Tomato1.311090.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.751550.503
1-1-2/M821.064421
12-2/M820.885980.955
12-4/M821.038461
1-3/M82N/AN/A
2-1-1/M820.927170.92
2-1/M820.753970.345
2-6/M820.80717
3-2/M821.4779
4-1-1/M820.88536
4-1/M821.074760.512
4-3-2/M820.83727
4-3/M821.180431
5-3/M820.950361
6-2/M821.26593
6-3/M820.981211
7-1/M821.211840.741
7-2/M821.960420.299
9-3-2/M820.813210.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.055831
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.973351
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.151010.399
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.212350.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.097650.846
DC3000/delta hrp 6h0.982310.95
DC3000/delta hrp 12h1.163271
DC3000/delta hrp 24h0.954490.585

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.39021
DC3000 delta B/DC3000 delta AB0.48564

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.246561
Exp 36h1.036811
Exp 60h1.149150.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.853881
Var 0h1.045390.98
Var 12h I row2-row10.947370.705
Var 12h NI row2-row11.294750.649
Var 36h I row2-row10.985680.41
Var 36h NI row2-row10.937980.743
Var 60h I row2-row10.707790.374
Var 60h NI row2-row10.815040.359
Time course 0hI-0hNI1.08380.852
Time course 12hI-12hNI0.968970.858
Time course 36hI-36hNI1.343910.028
Time course 60hI-60hNI4.337280.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.722150.237
transgenic ySAMdc/azygous control (breaker)0.597960.173
transgenic ySAMdc/azygous control (red)0.912971

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.043710.223

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.607790.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.945211
Manapal/WT (break)0.595830.262
Manapal/WT (red)0.647980.181