Expression of 1-1-8.3.18.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.74381 | 0.096 |
27DAP/17DAP | 1.0175 | 0.926 |
39DAP/27DAP | 0.94086 | 0.67 |
41DAP/39DAP | 1.05479 | 0.696 |
42DAP/41DAP | 0.99116 | 1 |
43DAP/42DAP | 0.90615 | 0.813 |
47DAP/43DAP | 1.00892 | 0.953 |
52DAP/47DAP | 0.95309 | 0.821 |
57DAP/52DAP | 1.01354 | 0.987 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89134 | 0.246 |
17DAP/reference | 0.87362 | 0.169 |
27DAP/reference | 1.03755 | 0.82 |
39DAP/reference | 1.20983 | 0.016 |
41DAP/reference | 0.96131 | 0.542 |
42DAP/reference | 1.00325 | 0.707 |
43DAP/reference | 1.0171 | 0.899 |
47DAP/reference | 1.27421 | 0.04 |
52DAP/reference | 1.28727 | 0.031 |
57DAP/reference | 1.30537 | 0.012 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.35659 | 0.414 |
27DAP/17DAP | 1.68829 | 0.023 |
39DAP/27DAP | 0.92767 | 0.247 |
41DAP/39DAP | 1.10934 | 0.895 |
42DAP/41DAP | 1.06558 | 0.999 |
43DAP/42DAP | 1.31677 | 0.03 |
47DAP/43DAP | 0.91162 | 0.31 |
52DAP/47DAP | 1.33633 | 0.338 |
57DAP/52DAP | 0.91749 | 0.505 |
57DAP/7DAP | 1.03334 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29912 | 0.037 |
17DAP/reference | 1.8594 | 0.007 |
27DAP/reference | 1.73013 | 0.009 |
39DAP/reference | 1.76314 | 0.006 |
41DAP/reference | 1.88122 | 0.013 |
42DAP/reference | 1.98243 | 0.006 |
43DAP/reference | 2.73818 | 0.006 |
47DAP/reference | 1.86808 | 0.027 |
52DAP/reference | 1.98797 | 0.008 |
57DAP/reference | 2.31216 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80095 | 0.14 |
17DAP/reference | 0.97332 | 0.523 |
27DAP/reference | 1.03807 | 0.875 |
39DAP/reference | 1.06097 | 0.556 |
41DAP/reference | 0.95481 | 0.291 |
42DAP/reference | 1.02112 | 1 |
43DAP/reference | 1.05663 | 0.761 |
47DAP/reference | 1.12731 | 0.225 |
52DAP/reference | 1.27612 | 0.006 |
57DAP/reference | 1.18397 | 0.166 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13958 | 0.212 |
17DAP/reference | 1.19426 | 0.431 |
27DAP/reference | 2.08645 | 0.016 |
39DAP/reference | 1.88154 | 0.007 |
41DAP/reference | 1.4295 | 0.017 |
42DAP/reference | 1.63822 | 0.012 |
43DAP/reference | 1.83481 | 0.024 |
47DAP/reference | 0.96625 | 0.296 |
52DAP/reference | 1.51284 | 0.11 |
57DAP/reference | 1.28955 | 0.09 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.51391 | 0.631 |
26DAP/20DAP | 1.44818 | 1 |
34DAP/26DAP | 1.69202 | 0.542 |
51DAP/34DAP | 0.57944 | 0.069 |
52DAP/51DAP | 1.66564 | 0.039 |
53DAP/52DAP | 0.92824 | 0.835 |
55DAP/53DAP | 1.18115 | 0.989 |
57DAP/55DAP | 1.00691 | 0.891 |
62DAP/57DAP | 0.96842 | 0.994 |
68DAP/62DAP | 1.06151 | 1 |
68DAP/14DAP | 1.21159 | 0.762 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.4422 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.6686 | 0.168 |
Mature Green Tomato/Ripe Tomato | 0.90662 | 0.347 |
Immature Eggplant/Mature Eggplant | 1.04417 | 0.507 |
Ripe Pepper/Ripe Tomato | 0.84478 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.31109 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.75155 | 0.503 |
1-1-2/M82 | 1.06442 | 1 |
12-2/M82 | 0.88598 | 0.955 |
12-4/M82 | 1.03846 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.92717 | 0.92 |
2-1/M82 | 0.75397 | 0.345 |
2-6/M82 | 0.80717 | |
3-2/M82 | 1.4779 | |
4-1-1/M82 | 0.88536 | |
4-1/M82 | 1.07476 | 0.512 |
4-3-2/M82 | 0.83727 | |
4-3/M82 | 1.18043 | 1 |
5-3/M82 | 0.95036 | 1 |
6-2/M82 | 1.26593 | |
6-3/M82 | 0.98121 | 1 |
7-1/M82 | 1.21184 | 0.741 |
7-2/M82 | 1.96042 | 0.299 |
9-3-2/M82 | 0.81321 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.05583 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.97335 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.15101 | 0.399 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.21235 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09765 | 0.846 |
DC3000/delta hrp 6h | 0.98231 | 0.95 |
DC3000/delta hrp 12h | 1.16327 | 1 |
DC3000/delta hrp 24h | 0.95449 | 0.585 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.39021 | |
DC3000 delta B/DC3000 delta AB | 0.48564 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.24656 | 1 |
Exp 36h | 1.03681 | 1 |
Exp 60h | 1.14915 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.85388 | 1 |
Var 0h | 1.04539 | 0.98 |
Var 12h I row2-row1 | 0.94737 | 0.705 |
Var 12h NI row2-row1 | 1.29475 | 0.649 |
Var 36h I row2-row1 | 0.98568 | 0.41 |
Var 36h NI row2-row1 | 0.93798 | 0.743 |
Var 60h I row2-row1 | 0.70779 | 0.374 |
Var 60h NI row2-row1 | 0.81504 | 0.359 |
Time course 0hI-0hNI | 1.0838 | 0.852 |
Time course 12hI-12hNI | 0.96897 | 0.858 |
Time course 36hI-36hNI | 1.34391 | 0.028 |
Time course 60hI-60hNI | 4.33728 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.72215 | 0.237 |
transgenic ySAMdc/azygous control (breaker) | 0.59796 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.91297 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04371 | 0.223 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.60779 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.94521 | 1 |
Manapal/WT (break) | 0.59583 | 0.262 |
Manapal/WT (red) | 0.64798 | 0.181 |
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