Expression of 1-1-8.3.18.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.763440.381
27DAP/17DAP1.382850.761
39DAP/27DAP1.44390.335
41DAP/39DAP1.101340.96
42DAP/41DAP1.502660.33
43DAP/42DAP1.02461
47DAP/43DAP1.285410.727
52DAP/47DAP0.74030.421
57DAP/52DAP1.228810.806

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.118010.132
17DAP/reference1.056960.318
27DAP/reference1.07680.161
39DAP/reference0.981850.734
41DAP/reference1.197870.093
42DAP/reference1.181510.001
43DAP/reference0.956190.576
47DAP/reference1.112420.011
52DAP/reference1.32180.027
57DAP/reference1.03190.901

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.280620.196
27DAP/17DAP1.738950.378
39DAP/27DAP1.004120.997
41DAP/39DAP0.89510.747
42DAP/41DAP1.528330.478
43DAP/42DAP0.933680.558
47DAP/43DAP0.943150.796
52DAP/47DAP1.146560.844
57DAP/52DAP1.41720.363
57DAP/7DAP0.772921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.524990.032
17DAP/reference1.938390.006
27DAP/reference2.01130.009
39DAP/reference1.803140.006
41DAP/reference1.849470.013
42DAP/reference1.72770.012
43DAP/reference2.01670.006
47DAP/reference1.427360.386
52DAP/reference1.792640.007
57DAP/reference1.97050.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.118890.373
17DAP/reference1.315650.013
27DAP/reference1.096180.271
39DAP/reference1.363350.016
41DAP/reference1.273620.122
42DAP/reference1.100740.408
43DAP/reference0.976350.607
47DAP/reference1.069260.311
52DAP/reference1.46190.008
57DAP/reference1.288660.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.330190.042
17DAP/reference1.188570.45
27DAP/reference1.828790.023
39DAP/reference1.898390.014
41DAP/reference1.65410.013
42DAP/reference1.72880.008
43DAP/reference1.47460.011
47DAP/reference0.934790.259
52DAP/reference1.774360.051
57DAP/reference1.393910.126

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.048110.966
26DAP/20DAP0.837250.512
34DAP/26DAP1.046830.94
51DAP/34DAP1.4030.224
52DAP/51DAP0.982011
53DAP/52DAP1.83760.179
55DAP/53DAP1.178370.335
57DAP/55DAP1.004671
62DAP/57DAP0.675740.088
68DAP/62DAP1.210350.914
68DAP/14DAP0.998181

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.027610.774

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.869690.356
Mature Green Tomato/Ripe Tomato0.954670.715
Immature Eggplant/Mature Eggplant0.725140.086
Ripe Pepper/Ripe Tomato1.414690.258
Mature Eggplant/Ripe Tomato0.84031

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.167190.742
1-1-2/M820.992971
12-2/M821.080041
12-4/M820.860710.33
1-3/M821.00811
2-1-1/M820.931710.465
2-1/M820.79430.325
2-6/M821.011841
3-2/M821.41569
4-1-1/M820.901381
4-1/M820.91973
4-3-2/M820.86529
4-3/M821.105461
5-3/M820.846871
6-2/M821.273881
6-3/M820.987831
7-1/M821.047620.598
7-2/M821.207640.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.76381
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.87365
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation2.472420.075

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.052640.921
DC3000/delta hrp 6h1.091141
DC3000/delta hrp 12h1.007331
DC3000/delta hrp 24h0.903680.236

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.006281
DC3000 delta B/DC3000 delta AB1.952060.17

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.100071
Exp 36h0.700230.406
Exp 60h0.800470.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.916341
Var 0h1.111430.936
Var 12h I row2-row11.06180.613
Var 12h NI row2-row11.125970.281
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row11.2710.246
Var 60h I row2-row10.642880.285
Var 60h NI row2-row10.854120.866
Time course 0hI-0hNI1.198620.719
Time course 12hI-12hNI0.679510.138
Time course 36hI-36hNI0.755090.058
Time course 60hI-60hNI0.978461

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.897160.286
transgenic ySAMdc/azygous control (breaker)0.955710.49
transgenic ySAMdc/azygous control (red)1.001631

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.886980.052

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.71810.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.907091
Manapal/WT (break)0.838690.333
Manapal/WT (red)0.639590.181