Expression of 1-1-8.3.18.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.76344 | 0.381 |
27DAP/17DAP | 1.38285 | 0.761 |
39DAP/27DAP | 1.4439 | 0.335 |
41DAP/39DAP | 1.10134 | 0.96 |
42DAP/41DAP | 1.50266 | 0.33 |
43DAP/42DAP | 1.0246 | 1 |
47DAP/43DAP | 1.28541 | 0.727 |
52DAP/47DAP | 0.7403 | 0.421 |
57DAP/52DAP | 1.22881 | 0.806 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11801 | 0.132 |
17DAP/reference | 1.05696 | 0.318 |
27DAP/reference | 1.0768 | 0.161 |
39DAP/reference | 0.98185 | 0.734 |
41DAP/reference | 1.19787 | 0.093 |
42DAP/reference | 1.18151 | 0.001 |
43DAP/reference | 0.95619 | 0.576 |
47DAP/reference | 1.11242 | 0.011 |
52DAP/reference | 1.3218 | 0.027 |
57DAP/reference | 1.0319 | 0.901 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28062 | 0.196 |
27DAP/17DAP | 1.73895 | 0.378 |
39DAP/27DAP | 1.00412 | 0.997 |
41DAP/39DAP | 0.8951 | 0.747 |
42DAP/41DAP | 1.52833 | 0.478 |
43DAP/42DAP | 0.93368 | 0.558 |
47DAP/43DAP | 0.94315 | 0.796 |
52DAP/47DAP | 1.14656 | 0.844 |
57DAP/52DAP | 1.4172 | 0.363 |
57DAP/7DAP | 0.77292 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.52499 | 0.032 |
17DAP/reference | 1.93839 | 0.006 |
27DAP/reference | 2.0113 | 0.009 |
39DAP/reference | 1.80314 | 0.006 |
41DAP/reference | 1.84947 | 0.013 |
42DAP/reference | 1.7277 | 0.012 |
43DAP/reference | 2.0167 | 0.006 |
47DAP/reference | 1.42736 | 0.386 |
52DAP/reference | 1.79264 | 0.007 |
57DAP/reference | 1.9705 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11889 | 0.373 |
17DAP/reference | 1.31565 | 0.013 |
27DAP/reference | 1.09618 | 0.271 |
39DAP/reference | 1.36335 | 0.016 |
41DAP/reference | 1.27362 | 0.122 |
42DAP/reference | 1.10074 | 0.408 |
43DAP/reference | 0.97635 | 0.607 |
47DAP/reference | 1.06926 | 0.311 |
52DAP/reference | 1.4619 | 0.008 |
57DAP/reference | 1.28866 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33019 | 0.042 |
17DAP/reference | 1.18857 | 0.45 |
27DAP/reference | 1.82879 | 0.023 |
39DAP/reference | 1.89839 | 0.014 |
41DAP/reference | 1.6541 | 0.013 |
42DAP/reference | 1.7288 | 0.008 |
43DAP/reference | 1.4746 | 0.011 |
47DAP/reference | 0.93479 | 0.259 |
52DAP/reference | 1.77436 | 0.051 |
57DAP/reference | 1.39391 | 0.126 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04811 | 0.966 |
26DAP/20DAP | 0.83725 | 0.512 |
34DAP/26DAP | 1.04683 | 0.94 |
51DAP/34DAP | 1.403 | 0.224 |
52DAP/51DAP | 0.98201 | 1 |
53DAP/52DAP | 1.8376 | 0.179 |
55DAP/53DAP | 1.17837 | 0.335 |
57DAP/55DAP | 1.00467 | 1 |
62DAP/57DAP | 0.67574 | 0.088 |
68DAP/62DAP | 1.21035 | 0.914 |
68DAP/14DAP | 0.99818 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.02761 | 0.774 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.86969 | 0.356 |
Mature Green Tomato/Ripe Tomato | 0.95467 | 0.715 |
Immature Eggplant/Mature Eggplant | 0.72514 | 0.086 |
Ripe Pepper/Ripe Tomato | 1.41469 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.8403 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.16719 | 0.742 |
1-1-2/M82 | 0.99297 | 1 |
12-2/M82 | 1.08004 | 1 |
12-4/M82 | 0.86071 | 0.33 |
1-3/M82 | 1.0081 | 1 |
2-1-1/M82 | 0.93171 | 0.465 |
2-1/M82 | 0.7943 | 0.325 |
2-6/M82 | 1.01184 | 1 |
3-2/M82 | 1.41569 | |
4-1-1/M82 | 0.90138 | 1 |
4-1/M82 | 0.91973 | |
4-3-2/M82 | 0.86529 | |
4-3/M82 | 1.10546 | 1 |
5-3/M82 | 0.84687 | 1 |
6-2/M82 | 1.27388 | 1 |
6-3/M82 | 0.98783 | 1 |
7-1/M82 | 1.04762 | 0.598 |
7-2/M82 | 1.20764 | 0.385 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.76381 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.87365 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 2.47242 | 0.075 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05264 | 0.921 |
DC3000/delta hrp 6h | 1.09114 | 1 |
DC3000/delta hrp 12h | 1.00733 | 1 |
DC3000/delta hrp 24h | 0.90368 | 0.236 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.00628 | 1 |
DC3000 delta B/DC3000 delta AB | 1.95206 | 0.17 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.10007 | 1 |
Exp 36h | 0.70023 | 0.406 |
Exp 60h | 0.80047 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.91634 | 1 |
Var 0h | 1.11143 | 0.936 |
Var 12h I row2-row1 | 1.0618 | 0.613 |
Var 12h NI row2-row1 | 1.12597 | 0.281 |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | 1.271 | 0.246 |
Var 60h I row2-row1 | 0.64288 | 0.285 |
Var 60h NI row2-row1 | 0.85412 | 0.866 |
Time course 0hI-0hNI | 1.19862 | 0.719 |
Time course 12hI-12hNI | 0.67951 | 0.138 |
Time course 36hI-36hNI | 0.75509 | 0.058 |
Time course 60hI-60hNI | 0.97846 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89716 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 0.95571 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.00163 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.88698 | 0.052 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.7181 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.90709 | 1 |
Manapal/WT (break) | 0.83869 | 0.333 |
Manapal/WT (red) | 0.63959 | 0.181 |
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