Expression of 1-1-8.3.19.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09424 | 0.878 |
27DAP/17DAP | 1.2316 | 0.798 |
39DAP/27DAP | 0.93839 | 0.652 |
41DAP/39DAP | 0.96222 | 0.69 |
42DAP/41DAP | 1.06149 | 0.941 |
43DAP/42DAP | 1.18764 | 0.778 |
47DAP/43DAP | 1.09554 | 0.481 |
52DAP/47DAP | 0.73662 | 0.331 |
57DAP/52DAP | 0.9879 | 0.966 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26395 | 0.46 |
17DAP/reference | 1.16441 | 0.858 |
27DAP/reference | 1.3161 | 0.135 |
39DAP/reference | 1.52433 | 0.017 |
41DAP/reference | 1.43821 | 0.171 |
42DAP/reference | 1.19877 | 0.2 |
43DAP/reference | 1.48759 | |
47DAP/reference | 1.29594 | 0.01 |
52DAP/reference | 1.45706 | 0.032 |
57DAP/reference | 1.65209 | 0.016 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.32049 | 0.06 |
27DAP/17DAP | 0.84871 | 0.39 |
39DAP/27DAP | 0.98897 | 0.977 |
41DAP/39DAP | 1.0633 | 1 |
42DAP/41DAP | 1.28988 | 0.02 |
43DAP/42DAP | 0.84748 | 0.07 |
47DAP/43DAP | 0.88641 | 0.489 |
52DAP/47DAP | 2.37172 | 0.048 |
57DAP/52DAP | 2.0177 | 0.038 |
57DAP/7DAP | 2.38796 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91407 | 0.296 |
17DAP/reference | 0.99642 | 0.518 |
27DAP/reference | 1.02371 | 0.974 |
39DAP/reference | 1.07154 | 0.669 |
41DAP/reference | 1.06794 | 0.524 |
42DAP/reference | 0.86847 | 0.111 |
43DAP/reference | 0.80876 | 0.04 |
47DAP/reference | 1.09781 | 0.822 |
52DAP/reference | 0.7055 | 0.016 |
57DAP/reference | 0.8796 | 0.118 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21422 | 0.495 |
17DAP/reference | 1.01626 | 0.805 |
27DAP/reference | 1.28643 | 0.02 |
39DAP/reference | 1.32806 | 0.29 |
41DAP/reference | 1.30997 | 0.028 |
42DAP/reference | 1.28643 | 0.037 |
43DAP/reference | 1.54519 | 0.009 |
47DAP/reference | 1.24948 | 0.009 |
52DAP/reference | 1.36718 | 0.098 |
57DAP/reference | 1.23752 | 0.374 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90232 | 0.311 |
17DAP/reference | 0.93826 | 0.444 |
27DAP/reference | 0.87564 | 0.243 |
39DAP/reference | 0.92737 | 0.199 |
41DAP/reference | 0.89579 | 0.209 |
42DAP/reference | 1.12943 | 0.802 |
43DAP/reference | 1.13019 | 0.482 |
47DAP/reference | 1.06728 | 0.877 |
52DAP/reference | 0.8784 | 0.405 |
57DAP/reference | 1.21679 | 0.255 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.88486 | 1 |
26DAP/20DAP | 1.64704 | 1 |
34DAP/26DAP | 3.9601 | 0.819 |
51DAP/34DAP | 1.54477 | 0.937 |
52DAP/51DAP | 5.11499 | 0.033 |
53DAP/52DAP | 0.71339 | 0.06 |
55DAP/53DAP | 1.5721 | 0.046 |
57DAP/55DAP | 0.66017 | 0.052 |
62DAP/57DAP | 1.68658 | 0.303 |
68DAP/62DAP | 4.09247 | 0.869 |
68DAP/14DAP | 1.86603 | 0.139 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.26835 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.95695 | 0.569 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.20542 | |
Mature Eggplant/Ripe Tomato | 0.59817 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.21768 | 0.536 |
1-1-2/M82 | 1.07101 | 0.977 |
12-2/M82 | 0.9392 | 0.862 |
12-4/M82 | 1.32056 | 1 |
1-3/M82 | 0.7205 | 0.441 |
2-1-1/M82 | 0.92602 | 0.683 |
2-1/M82 | 0.77913 | |
2-6/M82 | 1.13151 | 1 |
3-2/M82 | 0.98183 | 0.451 |
4-1-1/M82 | 1.14744 | 1 |
4-1/M82 | 0.85878 | 1 |
4-3-2/M82 | 1.18325 | 1 |
4-3/M82 | 1.1675 | 1 |
5-3/M82 | 1.11179 | 1 |
6-2/M82 | 1.20098 | 1 |
6-3/M82 | 0.95335 | 1 |
7-1/M82 | 1.12002 | 1 |
7-2/M82 | 1.08714 | 1 |
9-3-2/M82 | 1.27488 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 3.27834 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.98098 | |
IL7-3/WTpooled | 3.60058 | 1 |
IL12-4/WTpooled | 2.96901 | 0.511 |
IL1-4/WTpooled | 4.62635 | 1 |
WT/WTpooled | 0.78634 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16679 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01644 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.04661 | 1 |
DC3000/delta hrp 24h | 1.00076 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.53168 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.66146 | 0.087 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 0.85375 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04242 | 1 |
Var 0h | 1.03819 | 0.98 |
Var 12h I row2-row1 | 0.76768 | 0.514 |
Var 12h NI row2-row1 | 1.15091 | 0.649 |
Var 36h I row2-row1 | 0.94689 | 1 |
Var 36h NI row2-row1 | 1.33791 | 0.253 |
Var 60h I row2-row1 | 0.88575 | 0.832 |
Var 60h NI row2-row1 | 0.94397 | 1 |
Time course 0hI-0hNI | 0.98178 | 0.881 |
Time course 12hI-12hNI | 1.0508 | 0.892 |
Time course 36hI-36hNI | 0.95006 | 0.418 |
Time course 60hI-60hNI | 0.76357 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.44084 | 0.257 |
transgenic ySAMdc/azygous control (breaker) | 0.98587 | 1 |
transgenic ySAMdc/azygous control (red) | 0.8526 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.88644 | 0.08 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04735 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.89825 | 1 |
Manapal/WT (break) | 1.21495 | 1 |
Manapal/WT (red) | 1.15972 | 1 |
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