Expression of 1-1-8.3.19.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.094240.878
27DAP/17DAP1.23160.798
39DAP/27DAP0.938390.652
41DAP/39DAP0.962220.69
42DAP/41DAP1.061490.941
43DAP/42DAP1.187640.778
47DAP/43DAP1.095540.481
52DAP/47DAP0.736620.331
57DAP/52DAP0.98790.966

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.263950.46
17DAP/reference1.164410.858
27DAP/reference1.31610.135
39DAP/reference1.524330.017
41DAP/reference1.438210.171
42DAP/reference1.198770.2
43DAP/reference1.48759
47DAP/reference1.295940.01
52DAP/reference1.457060.032
57DAP/reference1.652090.016

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.320490.06
27DAP/17DAP0.848710.39
39DAP/27DAP0.988970.977
41DAP/39DAP1.06331
42DAP/41DAP1.289880.02
43DAP/42DAP0.847480.07
47DAP/43DAP0.886410.489
52DAP/47DAP2.371720.048
57DAP/52DAP2.01770.038
57DAP/7DAP2.387961

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.914070.296
17DAP/reference0.996420.518
27DAP/reference1.023710.974
39DAP/reference1.071540.669
41DAP/reference1.067940.524
42DAP/reference0.868470.111
43DAP/reference0.808760.04
47DAP/reference1.097810.822
52DAP/reference0.70550.016
57DAP/reference0.87960.118

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.214220.495
17DAP/reference1.016260.805
27DAP/reference1.286430.02
39DAP/reference1.328060.29
41DAP/reference1.309970.028
42DAP/reference1.286430.037
43DAP/reference1.545190.009
47DAP/reference1.249480.009
52DAP/reference1.367180.098
57DAP/reference1.237520.374

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.902320.311
17DAP/reference0.938260.444
27DAP/reference0.875640.243
39DAP/reference0.927370.199
41DAP/reference0.895790.209
42DAP/reference1.129430.802
43DAP/reference1.130190.482
47DAP/reference1.067280.877
52DAP/reference0.87840.405
57DAP/reference1.216790.255

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.884861
26DAP/20DAP1.647041
34DAP/26DAP3.96010.819
51DAP/34DAP1.544770.937
52DAP/51DAP5.114990.033
53DAP/52DAP0.713390.06
55DAP/53DAP1.57210.046
57DAP/55DAP0.660170.052
62DAP/57DAP1.686580.303
68DAP/62DAP4.092470.869
68DAP/14DAP1.866030.139

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.268350.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.956950.569
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.20542
Mature Eggplant/Ripe Tomato0.598171

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.217680.536
1-1-2/M821.071010.977
12-2/M820.93920.862
12-4/M821.320561
1-3/M820.72050.441
2-1-1/M820.926020.683
2-1/M820.77913
2-6/M821.131511
3-2/M820.981830.451
4-1-1/M821.147441
4-1/M820.858781
4-3-2/M821.183251
4-3/M821.16751
5-3/M821.111791
6-2/M821.200981
6-3/M820.953351
7-1/M821.120021
7-2/M821.087141
9-3-2/M821.274881

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled3.27834
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.98098
IL7-3/WTpooled3.600581
IL12-4/WTpooled2.969010.511
IL1-4/WTpooled4.626351
WT/WTpooled0.786341

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.166790.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.016441
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.046611
DC3000/delta hrp 24h1.000761

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.531680.042
DC3000 delta B/DC3000 delta AB1.661460.087

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h0.853750.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.042421
Var 0h1.038190.98
Var 12h I row2-row10.767680.514
Var 12h NI row2-row11.150910.649
Var 36h I row2-row10.946891
Var 36h NI row2-row11.337910.253
Var 60h I row2-row10.885750.832
Var 60h NI row2-row10.943971
Time course 0hI-0hNI0.981780.881
Time course 12hI-12hNI1.05080.892
Time course 36hI-36hNI0.950060.418
Time course 60hI-60hNI0.763570.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.440840.257
transgenic ySAMdc/azygous control (breaker)0.985871
transgenic ySAMdc/azygous control (red)0.85261

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.886440.08

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.047351

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.898251
Manapal/WT (break)1.214951
Manapal/WT (red)1.159721