Expression of 1-1-8.3.2.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.991410.858
27DAP/17DAP0.917550.817
39DAP/27DAP1.408970.161
41DAP/39DAP0.845250.419
42DAP/41DAP1.231890.755
43DAP/42DAP0.987140.909
47DAP/43DAP0.890580.625
52DAP/47DAP0.940760.814
57DAP/52DAP1.016141

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.092540.265
17DAP/reference1.094380.138
27DAP/reference0.996520.847
39DAP/reference1.091190.058
41DAP/reference1.161750.451
42DAP/reference1.05360.812
43DAP/reference1.122940.053
47DAP/reference1.030180.885
52DAP/reference0.909620.195
57DAP/reference1.012511

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.042720.593
27DAP/17DAP0.981740.878
39DAP/27DAP0.986080.925
41DAP/39DAP1.223370.656
42DAP/41DAP0.987520.803
43DAP/42DAP0.808030.044
47DAP/43DAP1.038740.853
52DAP/47DAP1.016130.973
57DAP/52DAP0.977970.756
57DAP/7DAP0.974491

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.564680.025
17DAP/reference1.42860.013
27DAP/reference1.33440.009
39DAP/reference1.416030.009
41DAP/reference1.231430.039
42DAP/reference1.334380.1
43DAP/reference1.085020.386
47DAP/reference1.201640.036
52DAP/reference1.432430.008
57DAP/reference1.375620.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.348040.043
17DAP/reference1.243910.036
27DAP/reference1.311860.031
39DAP/reference1.423230.011
41DAP/reference0.980870.472
42DAP/reference1.0261
43DAP/reference1.266710.017
47DAP/reference1.244430.084
52DAP/reference1.033960.259
57DAP/reference1.247050.193

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.468330.02
17DAP/reference1.038820.675
27DAP/reference0.978890.516
39DAP/reference1.012241
41DAP/reference1.078290.397
42DAP/reference0.933340.445
43DAP/reference1.1810.096
47DAP/reference1.130670.12
52DAP/reference1.477240.105
57DAP/reference1.177620.223

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.124550.966
26DAP/20DAP1.551520.101
34DAP/26DAP0.730860.144
51DAP/34DAP0.649470.051
52DAP/51DAP0.979121
53DAP/52DAP0.953910.803
55DAP/53DAP0.85130.181
57DAP/55DAP1.272570.348
62DAP/57DAP1.363780.393
68DAP/62DAP1.119670.754
68DAP/14DAP1.425850.153

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.786810.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.024451
Mature Green Tomato/Ripe Tomato1.558930.03
Immature Eggplant/Mature Eggplant1.256830.063
Ripe Pepper/Ripe Tomato1.104831
Mature Eggplant/Ripe Tomato1.15071

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.835270.841
1-1-2/M821.221
12-2/M820.953230.955
12-4/M821.015591
1-3/M822.281780.248
2-1-1/M821.127280.764
2-1/M820.746610.325
2-6/M820.783880.501
3-2/M821.10230.967
4-1-1/M821.049891
4-1/M821.18411
4-3-2/M821.422130.508
4-3/M821.118140.268
5-3/M821.360330.572
6-2/M821.091681
6-3/M821.054111
7-1/M820.897480.509
7-2/M821.22420.385
9-3-2/M821.035181

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.2475
IL2-6/WTpooled0.638480.383
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.735380.418
IL12-4/WTpooled0.579860.539
IL1-4/WTpooled0.477180.457
WT/WTpooled1.001751

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.953351

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.976681
DC3000/delta hrp 6h0.958730.95
DC3000/delta hrp 12h0.819581
DC3000/delta hrp 24h1.00960.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.186940.102
DC3000 delta B/DC3000 delta AB1.251180.181

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.871991
Exp 36h1.003021
Exp 60h1.096540.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.031141
Var 0h0.866221
Var 12h I row2-row11.036261
Var 12h NI row2-row11.170361
Var 36h I row2-row11.177130.291
Var 36h NI row2-row10.892620.645
Var 60h I row2-row10.825540.439
Var 60h NI row2-row10.757410.292
Time course 0hI-0hNI0.818340.051
Time course 12hI-12hNI1.067770.682
Time course 36hI-36hNI1.574520.031
Time course 60hI-60hNI1.887040.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.067880.511
transgenic ySAMdc/azygous control (breaker)1.41520.178
transgenic ySAMdc/azygous control (red)1.095231

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.438970.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.724070.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.746450.172
Manapal/WT (break)1.112560.381
Manapal/WT (red)1.119561