Expression of 1-1-8.3.2.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99141 | 0.858 |
27DAP/17DAP | 0.91755 | 0.817 |
39DAP/27DAP | 1.40897 | 0.161 |
41DAP/39DAP | 0.84525 | 0.419 |
42DAP/41DAP | 1.23189 | 0.755 |
43DAP/42DAP | 0.98714 | 0.909 |
47DAP/43DAP | 0.89058 | 0.625 |
52DAP/47DAP | 0.94076 | 0.814 |
57DAP/52DAP | 1.01614 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09254 | 0.265 |
17DAP/reference | 1.09438 | 0.138 |
27DAP/reference | 0.99652 | 0.847 |
39DAP/reference | 1.09119 | 0.058 |
41DAP/reference | 1.16175 | 0.451 |
42DAP/reference | 1.0536 | 0.812 |
43DAP/reference | 1.12294 | 0.053 |
47DAP/reference | 1.03018 | 0.885 |
52DAP/reference | 0.90962 | 0.195 |
57DAP/reference | 1.01251 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04272 | 0.593 |
27DAP/17DAP | 0.98174 | 0.878 |
39DAP/27DAP | 0.98608 | 0.925 |
41DAP/39DAP | 1.22337 | 0.656 |
42DAP/41DAP | 0.98752 | 0.803 |
43DAP/42DAP | 0.80803 | 0.044 |
47DAP/43DAP | 1.03874 | 0.853 |
52DAP/47DAP | 1.01613 | 0.973 |
57DAP/52DAP | 0.97797 | 0.756 |
57DAP/7DAP | 0.97449 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.56468 | 0.025 |
17DAP/reference | 1.4286 | 0.013 |
27DAP/reference | 1.3344 | 0.009 |
39DAP/reference | 1.41603 | 0.009 |
41DAP/reference | 1.23143 | 0.039 |
42DAP/reference | 1.33438 | 0.1 |
43DAP/reference | 1.08502 | 0.386 |
47DAP/reference | 1.20164 | 0.036 |
52DAP/reference | 1.43243 | 0.008 |
57DAP/reference | 1.37562 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34804 | 0.043 |
17DAP/reference | 1.24391 | 0.036 |
27DAP/reference | 1.31186 | 0.031 |
39DAP/reference | 1.42323 | 0.011 |
41DAP/reference | 0.98087 | 0.472 |
42DAP/reference | 1.026 | 1 |
43DAP/reference | 1.26671 | 0.017 |
47DAP/reference | 1.24443 | 0.084 |
52DAP/reference | 1.03396 | 0.259 |
57DAP/reference | 1.24705 | 0.193 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.46833 | 0.02 |
17DAP/reference | 1.03882 | 0.675 |
27DAP/reference | 0.97889 | 0.516 |
39DAP/reference | 1.01224 | 1 |
41DAP/reference | 1.07829 | 0.397 |
42DAP/reference | 0.93334 | 0.445 |
43DAP/reference | 1.181 | 0.096 |
47DAP/reference | 1.13067 | 0.12 |
52DAP/reference | 1.47724 | 0.105 |
57DAP/reference | 1.17762 | 0.223 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12455 | 0.966 |
26DAP/20DAP | 1.55152 | 0.101 |
34DAP/26DAP | 0.73086 | 0.144 |
51DAP/34DAP | 0.64947 | 0.051 |
52DAP/51DAP | 0.97912 | 1 |
53DAP/52DAP | 0.95391 | 0.803 |
55DAP/53DAP | 0.8513 | 0.181 |
57DAP/55DAP | 1.27257 | 0.348 |
62DAP/57DAP | 1.36378 | 0.393 |
68DAP/62DAP | 1.11967 | 0.754 |
68DAP/14DAP | 1.42585 | 0.153 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.78681 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.02445 | 1 |
Mature Green Tomato/Ripe Tomato | 1.55893 | 0.03 |
Immature Eggplant/Mature Eggplant | 1.25683 | 0.063 |
Ripe Pepper/Ripe Tomato | 1.10483 | 1 |
Mature Eggplant/Ripe Tomato | 1.1507 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.83527 | 0.841 |
1-1-2/M82 | 1.22 | 1 |
12-2/M82 | 0.95323 | 0.955 |
12-4/M82 | 1.01559 | 1 |
1-3/M82 | 2.28178 | 0.248 |
2-1-1/M82 | 1.12728 | 0.764 |
2-1/M82 | 0.74661 | 0.325 |
2-6/M82 | 0.78388 | 0.501 |
3-2/M82 | 1.1023 | 0.967 |
4-1-1/M82 | 1.04989 | 1 |
4-1/M82 | 1.1841 | 1 |
4-3-2/M82 | 1.42213 | 0.508 |
4-3/M82 | 1.11814 | 0.268 |
5-3/M82 | 1.36033 | 0.572 |
6-2/M82 | 1.09168 | 1 |
6-3/M82 | 1.05411 | 1 |
7-1/M82 | 0.89748 | 0.509 |
7-2/M82 | 1.2242 | 0.385 |
9-3-2/M82 | 1.03518 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.2475 | |
IL2-6/WTpooled | 0.63848 | 0.383 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.73538 | 0.418 |
IL12-4/WTpooled | 0.57986 | 0.539 |
IL1-4/WTpooled | 0.47718 | 0.457 |
WT/WTpooled | 1.00175 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95335 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97668 | 1 |
DC3000/delta hrp 6h | 0.95873 | 0.95 |
DC3000/delta hrp 12h | 0.81958 | 1 |
DC3000/delta hrp 24h | 1.0096 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.18694 | 0.102 |
DC3000 delta B/DC3000 delta AB | 1.25118 | 0.181 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87199 | 1 |
Exp 36h | 1.00302 | 1 |
Exp 60h | 1.09654 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03114 | 1 |
Var 0h | 0.86622 | 1 |
Var 12h I row2-row1 | 1.03626 | 1 |
Var 12h NI row2-row1 | 1.17036 | 1 |
Var 36h I row2-row1 | 1.17713 | 0.291 |
Var 36h NI row2-row1 | 0.89262 | 0.645 |
Var 60h I row2-row1 | 0.82554 | 0.439 |
Var 60h NI row2-row1 | 0.75741 | 0.292 |
Time course 0hI-0hNI | 0.81834 | 0.051 |
Time course 12hI-12hNI | 1.06777 | 0.682 |
Time course 36hI-36hNI | 1.57452 | 0.031 |
Time course 60hI-60hNI | 1.88704 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06788 | 0.511 |
transgenic ySAMdc/azygous control (breaker) | 1.4152 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.09523 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.43897 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.72407 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.74645 | 0.172 |
Manapal/WT (break) | 1.11256 | 0.381 |
Manapal/WT (red) | 1.11956 | 1 |
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