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Expression of 1-1-8.3.2.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.000370.911
27DAP/17DAP0.802930.494
39DAP/27DAP1.457990.201
41DAP/39DAP0.750760.152
42DAP/41DAP1.084930.974
43DAP/42DAP0.804870.468
47DAP/43DAP0.922120.701
52DAP/47DAP0.944090.803
57DAP/52DAP1.109410.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.155760.35
17DAP/reference1.039210.717
27DAP/reference0.885530.215
39DAP/reference0.959150.404
41DAP/reference1.021780.624
42DAP/reference1.086420.299
43DAP/reference1.093580.269
47DAP/reference1.05650.524
52DAP/reference1.074650.791
57DAP/reference1.171780.017

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.934270.245
27DAP/17DAP1.113830.426
39DAP/27DAP0.876030.089
41DAP/39DAP1.077970.801
42DAP/41DAP0.924580.453
43DAP/42DAP0.918420.293
47DAP/43DAP1.049240.708
52DAP/47DAP0.9280.624
57DAP/52DAP1.047170.813
57DAP/7DAP0.778731

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.483310.036
17DAP/reference1.408430.006
27DAP/reference1.290970.013
39DAP/reference1.366750.006
41DAP/reference1.32770.015
42DAP/reference1.395280.03
43DAP/reference1.299990.053
47DAP/reference1.224150.13
52DAP/reference1.561820.007
57DAP/reference1.3440.024

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.428820.078
17DAP/reference1.099120.628
27DAP/reference1.347030.025
39DAP/reference1.33120.066
41DAP/reference1.086110.382
42DAP/reference1.236820.015
43DAP/reference1.170590.392
47DAP/reference1.35760.018
52DAP/reference0.83650.021
57DAP/reference1.00690.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.503320.015
17DAP/reference1.131990.398
27DAP/reference1.069320.425
39DAP/reference1.243260.009
41DAP/reference1.175970.016
42DAP/reference1.173510.121
43DAP/reference1.124180.28
47DAP/reference0.947150.371
52DAP/reference1.479750.102
57DAP/reference1.354340.058

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.874420.89
26DAP/20DAP1.2930.212
34DAP/26DAP0.85830.455
51DAP/34DAP0.928210.546
52DAP/51DAP0.913241
53DAP/52DAP0.890580.52
55DAP/53DAP0.793460.088
57DAP/55DAP1.524620.075
62DAP/57DAP1.244720.833
68DAP/62DAP0.751760.177
68DAP/14DAP1.282850.311

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.350490.047

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.880660.384
Mature Green Tomato/Ripe Tomato1.136660.077
Immature Eggplant/Mature Eggplant1.144140.222
Ripe Pepper/Ripe Tomato1.143641
Mature Eggplant/Ripe Tomato1.074290.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.999291
1-1-2/M821.22410.977
12-2/M821.130420.61
12-4/M820.966981
1-3/M821.322361
2-1-1/M821.024531
2-1/M820.939430.74
2-6/M821.049661
3-2/M821.053050.967
4-1-1/M820.963291
4-1/M821.41236N/A
4-3-2/M821.376381
4-3/M821.304960.268
5-3/M821.151371
6-2/M820.798941
6-3/M820.995421
7-1/M820.983791
7-2/M821.061031
9-3-2/M820.93773N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.466440.243
IL2-6/WTpooled0.879411
IL7-5/WTpooled1.219931
IL7-3/WTpooled1.404981
IL12-4/WTpooled1.031371
IL1-4/WTpooled1.027991
WT/WTpooled0.962061

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.081590.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.014780.921
DC3000/delta hrp 6h0.860510.95
DC3000/delta hrp 12h0.891821
DC3000/delta hrp 24h1.04920.69

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.053190.313
DC3000 delta B/DC3000 delta AB0.932240.456

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.897641
Exp 36h1.068971
Exp 60h1.080381

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.970771
Var 0h1.029441
Var 12h I row2-row10.976670.948
Var 12h NI row2-row11.016861
Var 36h I row2-row11.216610.309
Var 36h NI row2-row10.942070.743
Var 60h I row2-row10.973810.832
Var 60h NI row2-row10.84940.359
Time course 0hI-0hNI0.870690.101
Time course 12hI-12hNI0.979810.87
Time course 36hI-36hNI1.13850.28
Time course 60hI-60hNI0.84630.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.960680.567
transgenic ySAMdc/azygous control (breaker)1.28860.248
transgenic ySAMdc/azygous control (red)1.10990.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.13590.055

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.700780.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.010491
Manapal/WT (break)1.258540.381
Manapal/WT (red)1.086120.413