Expression of 1-1-8.3.2.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.896510.503
27DAP/17DAP1.020781
39DAP/27DAP1.773290.26
41DAP/39DAP0.916460.645
42DAP/41DAP0.992021
43DAP/42DAP0.987790.93
47DAP/43DAP0.586930.099
52DAP/47DAP1.903130.19
57DAP/52DAP1.311360.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.17150.567
17DAP/reference1.216810.21
27DAP/reference1.082280.548
39DAP/reference1.067910.706
41DAP/reference1.037160.963
42DAP/reference1.065830.352
43DAP/reference1.330310.008
47DAP/reference1.788080.001
52DAP/reference1.529790.015
57DAP/reference1.566610.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.083510.728
27DAP/17DAP1.021230.968
39DAP/27DAP1.143040.514
41DAP/39DAP1.1050.853
42DAP/41DAP1.276020.166
43DAP/42DAP0.934310.336
47DAP/43DAP1.111490.147
52DAP/47DAP0.860850.142
57DAP/52DAP0.970340.737
57DAP/7DAP1.080141

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.081920.024
17DAP/reference1.763690.007
27DAP/reference1.352370.014
39DAP/reference3.43390.005
41DAP/reference1.706470.02
42DAP/reference2.891730.006
43DAP/reference3.97030.006
47DAP/reference2.65310.023
52DAP/reference3.325570.007
57DAP/reference3.060170.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.084650.626
17DAP/reference0.896720.106
27DAP/reference1.059760.988
39DAP/reference1.528350.014
41DAP/reference1.208780.074
42DAP/reference1.321880.023
43DAP/reference1.039680.846
47DAP/reference1.551310.021
52DAP/reference0.791470.047
57DAP/reference1.022750.754

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.576710.031
17DAP/reference1.072540.767
27DAP/reference1.362340.042
39DAP/reference1.751290.018
41DAP/reference1.26830.104
42DAP/reference1.622190.015
43DAP/reference2.34610.008
47DAP/reference1.427030.099
52DAP/reference2.115280.035
57DAP/reference3.074160.006

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.042980.966
26DAP/20DAP3.664880.097
34DAP/26DAP1.04570.998
51DAP/34DAP1.018930.993
52DAP/51DAP1.681290.033
53DAP/52DAP1.171070.858
55DAP/53DAP1.065640.848
57DAP/55DAP1.221370.841
62DAP/57DAP2.922740.133
68DAP/62DAP1.778570.007
68DAP/14DAP2.731720.065

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.836040.224

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.21490.059
Mature Green Tomato/Ripe Tomato0.783210.017
Immature Eggplant/Mature Eggplant0.949630.651
Ripe Pepper/Ripe Tomato1.101571
Mature Eggplant/Ripe Tomato0.639851

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.928450.934
1-1-2/M821.142841
12-2/M820.975120.955
12-4/M820.951781
1-3/M821.804870.277
2-1-1/M820.898260.784
2-1/M820.814691
2-6/M820.908541
3-2/M821.32475
4-1-1/M821.017891
4-1/M821.042661
4-3-2/M821.339620.508
4-3/M821.399120.268
5-3/M821.077080.496
6-2/M821.343940.235
6-3/M821.118081
7-1/M820.84320.803
7-2/M821.285940.385
9-3-2/M821.33920.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.849161
IL2-6/WTpooled1.56221
IL7-5/WTpooled1.280170.792
IL7-3/WTpooled0.944021
IL12-4/WTpooled0.886471
IL1-4/WTpooled1.080951
WT/WTpooled1.237480.999

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.040711

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.049210.921
DC3000/delta hrp 6h1.094751
DC3000/delta hrp 12h1.077541
DC3000/delta hrp 24h1.073880.567

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.164750.27
DC3000 delta B/DC3000 delta AB1.659530.146

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.089381
Exp 36h1.085051
Exp 60h1.227180.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.970051
Var 0h2.431580.98
Var 12h I row2-row11.011411
Var 12h NI row2-row11.206940.34
Var 36h I row2-row11.001771
Var 36h NI row2-row10.829330.549
Var 60h I row2-row10.914290.293
Var 60h NI row2-row10.84120.63
Time course 0hI-0hNI0.924040.379
Time course 12hI-12hNI1.025270.798
Time course 36hI-36hNI1.424820.006
Time course 60hI-60hNI2.201990.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.100930.397
transgenic ySAMdc/azygous control (breaker)0.687290.142
transgenic ySAMdc/azygous control (red)1.056390.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.14970.148

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.708340.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.271980.14
Manapal/WT (break)0.854720.333
Manapal/WT (red)0.798690.181