Expression of 1-1-8.3.2.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89651 | 0.503 |
27DAP/17DAP | 1.02078 | 1 |
39DAP/27DAP | 1.77329 | 0.26 |
41DAP/39DAP | 0.91646 | 0.645 |
42DAP/41DAP | 0.99202 | 1 |
43DAP/42DAP | 0.98779 | 0.93 |
47DAP/43DAP | 0.58693 | 0.099 |
52DAP/47DAP | 1.90313 | 0.19 |
57DAP/52DAP | 1.31136 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1715 | 0.567 |
17DAP/reference | 1.21681 | 0.21 |
27DAP/reference | 1.08228 | 0.548 |
39DAP/reference | 1.06791 | 0.706 |
41DAP/reference | 1.03716 | 0.963 |
42DAP/reference | 1.06583 | 0.352 |
43DAP/reference | 1.33031 | 0.008 |
47DAP/reference | 1.78808 | 0.001 |
52DAP/reference | 1.52979 | 0.015 |
57DAP/reference | 1.56661 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08351 | 0.728 |
27DAP/17DAP | 1.02123 | 0.968 |
39DAP/27DAP | 1.14304 | 0.514 |
41DAP/39DAP | 1.105 | 0.853 |
42DAP/41DAP | 1.27602 | 0.166 |
43DAP/42DAP | 0.93431 | 0.336 |
47DAP/43DAP | 1.11149 | 0.147 |
52DAP/47DAP | 0.86085 | 0.142 |
57DAP/52DAP | 0.97034 | 0.737 |
57DAP/7DAP | 1.08014 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.08192 | 0.024 |
17DAP/reference | 1.76369 | 0.007 |
27DAP/reference | 1.35237 | 0.014 |
39DAP/reference | 3.4339 | 0.005 |
41DAP/reference | 1.70647 | 0.02 |
42DAP/reference | 2.89173 | 0.006 |
43DAP/reference | 3.9703 | 0.006 |
47DAP/reference | 2.6531 | 0.023 |
52DAP/reference | 3.32557 | 0.007 |
57DAP/reference | 3.06017 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08465 | 0.626 |
17DAP/reference | 0.89672 | 0.106 |
27DAP/reference | 1.05976 | 0.988 |
39DAP/reference | 1.52835 | 0.014 |
41DAP/reference | 1.20878 | 0.074 |
42DAP/reference | 1.32188 | 0.023 |
43DAP/reference | 1.03968 | 0.846 |
47DAP/reference | 1.55131 | 0.021 |
52DAP/reference | 0.79147 | 0.047 |
57DAP/reference | 1.02275 | 0.754 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.57671 | 0.031 |
17DAP/reference | 1.07254 | 0.767 |
27DAP/reference | 1.36234 | 0.042 |
39DAP/reference | 1.75129 | 0.018 |
41DAP/reference | 1.2683 | 0.104 |
42DAP/reference | 1.62219 | 0.015 |
43DAP/reference | 2.3461 | 0.008 |
47DAP/reference | 1.42703 | 0.099 |
52DAP/reference | 2.11528 | 0.035 |
57DAP/reference | 3.07416 | 0.006 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04298 | 0.966 |
26DAP/20DAP | 3.66488 | 0.097 |
34DAP/26DAP | 1.0457 | 0.998 |
51DAP/34DAP | 1.01893 | 0.993 |
52DAP/51DAP | 1.68129 | 0.033 |
53DAP/52DAP | 1.17107 | 0.858 |
55DAP/53DAP | 1.06564 | 0.848 |
57DAP/55DAP | 1.22137 | 0.841 |
62DAP/57DAP | 2.92274 | 0.133 |
68DAP/62DAP | 1.77857 | 0.007 |
68DAP/14DAP | 2.73172 | 0.065 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.83604 | 0.224 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.2149 | 0.059 |
Mature Green Tomato/Ripe Tomato | 0.78321 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.94963 | 0.651 |
Ripe Pepper/Ripe Tomato | 1.10157 | 1 |
Mature Eggplant/Ripe Tomato | 0.63985 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92845 | 0.934 |
1-1-2/M82 | 1.14284 | 1 |
12-2/M82 | 0.97512 | 0.955 |
12-4/M82 | 0.95178 | 1 |
1-3/M82 | 1.80487 | 0.277 |
2-1-1/M82 | 0.89826 | 0.784 |
2-1/M82 | 0.81469 | 1 |
2-6/M82 | 0.90854 | 1 |
3-2/M82 | 1.32475 | |
4-1-1/M82 | 1.01789 | 1 |
4-1/M82 | 1.04266 | 1 |
4-3-2/M82 | 1.33962 | 0.508 |
4-3/M82 | 1.39912 | 0.268 |
5-3/M82 | 1.07708 | 0.496 |
6-2/M82 | 1.34394 | 0.235 |
6-3/M82 | 1.11808 | 1 |
7-1/M82 | 0.8432 | 0.803 |
7-2/M82 | 1.28594 | 0.385 |
9-3-2/M82 | 1.3392 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.84916 | 1 |
IL2-6/WTpooled | 1.56221 | |
IL7-5/WTpooled | 1.28017 | 0.792 |
IL7-3/WTpooled | 0.94402 | 1 |
IL12-4/WTpooled | 0.88647 | 1 |
IL1-4/WTpooled | 1.08095 | 1 |
WT/WTpooled | 1.23748 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04071 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04921 | 0.921 |
DC3000/delta hrp 6h | 1.09475 | 1 |
DC3000/delta hrp 12h | 1.07754 | 1 |
DC3000/delta hrp 24h | 1.07388 | 0.567 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.16475 | 0.27 |
DC3000 delta B/DC3000 delta AB | 1.65953 | 0.146 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.08938 | 1 |
Exp 36h | 1.08505 | 1 |
Exp 60h | 1.22718 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97005 | 1 |
Var 0h | 2.43158 | 0.98 |
Var 12h I row2-row1 | 1.01141 | 1 |
Var 12h NI row2-row1 | 1.20694 | 0.34 |
Var 36h I row2-row1 | 1.00177 | 1 |
Var 36h NI row2-row1 | 0.82933 | 0.549 |
Var 60h I row2-row1 | 0.91429 | 0.293 |
Var 60h NI row2-row1 | 0.8412 | 0.63 |
Time course 0hI-0hNI | 0.92404 | 0.379 |
Time course 12hI-12hNI | 1.02527 | 0.798 |
Time course 36hI-36hNI | 1.42482 | 0.006 |
Time course 60hI-60hNI | 2.20199 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.10093 | 0.397 |
transgenic ySAMdc/azygous control (breaker) | 0.68729 | 0.142 |
transgenic ySAMdc/azygous control (red) | 1.05639 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.1497 | 0.148 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.70834 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.27198 | 0.14 |
Manapal/WT (break) | 0.85472 | 0.333 |
Manapal/WT (red) | 0.79869 | 0.181 |
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