Expression of 1-1-8.3.2.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.29859 | 0.428 |
27DAP/17DAP | 1.09405 | 0.922 |
39DAP/27DAP | 0.78998 | 0.361 |
41DAP/39DAP | 1.15275 | 0.612 |
42DAP/41DAP | 0.98918 | 1 |
43DAP/42DAP | 1.01682 | 0.937 |
47DAP/43DAP | 1.17464 | 0.49 |
52DAP/47DAP | 1.14196 | 0.869 |
57DAP/52DAP | 0.91993 | 0.918 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77308 | 0.045 |
17DAP/reference | 0.75963 | 0.009 |
27DAP/reference | 0.76024 | 0.011 |
39DAP/reference | 0.78736 | 0.018 |
41DAP/reference | 0.76156 | 0.014 |
42DAP/reference | 0.89582 | 0.069 |
43DAP/reference | 0.9767 | 0.675 |
47DAP/reference | 0.89385 | 0.083 |
52DAP/reference | 1.07701 | 0.84 |
57DAP/reference | 1.09004 | 0.068 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.33676 | 0.132 |
27DAP/17DAP | 0.89006 | 0.748 |
39DAP/27DAP | 0.81782 | 0.156 |
41DAP/39DAP | 1.07252 | 0.896 |
42DAP/41DAP | 0.94322 | 0.612 |
43DAP/42DAP | 1.10801 | 0.103 |
47DAP/43DAP | 1.1659 | 0.352 |
52DAP/47DAP | 0.95605 | 0.884 |
57DAP/52DAP | 0.76892 | 0.081 |
57DAP/7DAP | 1.26307 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13633 | 0.894 |
17DAP/reference | 1.16332 | 0.754 |
27DAP/reference | 0.98622 | 0.698 |
39DAP/reference | 1.19472 | 0.237 |
41DAP/reference | 1.11511 | 0.637 |
42DAP/reference | 1.40237 | 0.233 |
43DAP/reference | 1.0144 | 0.637 |
47DAP/reference | 1.02629 | 0.868 |
52DAP/reference | 1.0364 | 0.802 |
57DAP/reference | 1.44385 | 0.232 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78321 | 0.015 |
17DAP/reference | 0.64018 | 0.004 |
27DAP/reference | 1.02557 | 1 |
39DAP/reference | 0.99254 | 0.569 |
41DAP/reference | 1.15291 | 0.215 |
42DAP/reference | 0.9399 | 0.355 |
43DAP/reference | 0.67726 | 0.026 |
47DAP/reference | 0.82878 | 0.029 |
52DAP/reference | 0.87602 | 0.051 |
57DAP/reference | 0.57999 | 0.003 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05649 | 0.75 |
17DAP/reference | 0.75933 | 0.189 |
27DAP/reference | 1.50078 | 0.111 |
39DAP/reference | 1.16207 | 0.578 |
41DAP/reference | 1.11872 | 0.306 |
42DAP/reference | 1.33801 | 0.251 |
43DAP/reference | 1.61407 | 0.109 |
47DAP/reference | 0.89081 | 0.191 |
52DAP/reference | 1.11393 | 0.89 |
57DAP/reference | 2.35318 | 0.01 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05136 | 0.966 |
26DAP/20DAP | 0.9037 | 1 |
34DAP/26DAP | 1.23196 | 1 |
51DAP/34DAP | 1.14587 | 0.445 |
52DAP/51DAP | 1.14277 | 0.439 |
53DAP/52DAP | 1.21516 | 0.643 |
55DAP/53DAP | 1.24979 | 0.049 |
57DAP/55DAP | 0.93093 | 0.754 |
62DAP/57DAP | 1.17373 | 0.8 |
68DAP/62DAP | 2.07285 | 0.056 |
68DAP/14DAP | 2.33825 | 0.029 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85151 | 0.065 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.05899 | 1 |
Immature Eggplant/Mature Eggplant | 0.44167 | 0.062 |
Ripe Pepper/Ripe Tomato | 1.34946 | 1 |
Mature Eggplant/Ripe Tomato | 2.3015 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95135 | 0.944 |
1-1-2/M82 | 0.97034 | 1 |
12-2/M82 | 1.1036 | 1 |
12-4/M82 | 1.05417 | 1 |
1-3/M82 | 0.94198 | 1 |
2-1-1/M82 | 1.24133 | 0.457 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.02143 | 1 |
3-2/M82 | 0.95325 | |
4-1-1/M82 | 1.14622 | 1 |
4-1/M82 | 1.28925 | |
4-3-2/M82 | 1.11325 | |
4-3/M82 | 0.99053 | 1 |
5-3/M82 | 0.87647 | 0.642 |
6-2/M82 | 0.88566 | 1 |
6-3/M82 | 1.06124 | 1 |
7-1/M82 | 0.95122 | |
7-2/M82 | 0.99856 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.9402 | 0.348 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.10232 | 1 |
IL12-4/WTpooled | 0.92386 | 0.581 |
IL1-4/WTpooled | 0.99151 | |
WT/WTpooled | 0.96057 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.92664 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97162 | 1 |
DC3000/delta hrp 6h | 1.23316 | 0.672 |
DC3000/delta hrp 12h | 1.0977 | 1 |
DC3000/delta hrp 24h | 1.05176 | 0.453 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.95624 | 1 |
DC3000 delta B/DC3000 delta AB | 1.003 | 0.787 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07185 | 1 |
Exp 36h | 1.06835 | 1 |
Exp 60h | 1.08984 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03688 | 1 |
Var 0h | 0.74347 | 0.933 |
Var 12h I row2-row1 | 1.13415 | 0.506 |
Var 12h NI row2-row1 | 0.86469 | 0.443 |
Var 36h I row2-row1 | 1.04543 | 1 |
Var 36h NI row2-row1 | 1.91849 | 0.482 |
Var 60h I row2-row1 | 0.92956 | 0.306 |
Var 60h NI row2-row1 | 1.23252 | 0.904 |
Time course 0hI-0hNI | 1.23158 | 0.63 |
Time course 12hI-12hNI | 1.16833 | 0.55 |
Time course 36hI-36hNI | 1.28049 | 0.401 |
Time course 60hI-60hNI | 0.34514 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01388 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 1.18499 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.05545 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08431 | 0.034 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92209 | 0.308 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.04931 | 1 |
Manapal/WT (break) | 1.24617 | 0.13 |
Manapal/WT (red) | 1.10737 | 1 |
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