Expression of 1-1-8.3.20.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.119460.602
27DAP/17DAP1.265280.749
39DAP/27DAP0.866560.537
41DAP/39DAP1.380030.286
42DAP/41DAP0.972721
43DAP/42DAP0.91140.867
47DAP/43DAP1.068330.733
52DAP/47DAP0.899910.761
57DAP/52DAP1.082270.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference0.49275
27DAP/reference0.9584
39DAP/reference0.22487
41DAP/referenceN/AN/A
42DAP/referenceN/AN/A
43DAP/reference1.90949
47DAP/reference0.67922
52DAP/reference0.835860.461
57DAP/reference0.36099

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.160050.619
27DAP/17DAP0.882140.58
39DAP/27DAP1.09680.519
41DAP/39DAP1.494310.108
42DAP/41DAP0.863860.358
43DAP/42DAP1.222850.413
47DAP/43DAP1.220560.339
52DAP/47DAP1.323080.63
57DAP/52DAP1.011590.784
57DAP/7DAP1.897491

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.85120.108
17DAP/reference0.949820.389
27DAP/reference1.006420.8
39DAP/reference0.753940.095
41DAP/reference0.945460.298
42DAP/reference0.717540.014
43DAP/reference0.858210.121
47DAP/reference1.01081
52DAP/reference0.938010.278
57DAP/reference1.04490.907

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.837350.032
17DAP/reference0.903230.253
27DAP/reference0.939680.452
39DAP/reference0.827690.221
41DAP/reference0.800160.03
42DAP/reference0.61263
43DAP/reference1.200670.441
47DAP/reference0.62034
52DAP/reference0.819810.021
57DAP/reference1.160570.552

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.801610.047
17DAP/reference0.934790.462
27DAP/reference0.906430.14
39DAP/reference0.941020.246
41DAP/reference1.017231
42DAP/reference1.110380.612
43DAP/reference0.878760.206
47DAP/reference0.992180.538
52DAP/reference1.378850.463
57DAP/reference0.953630.718

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.864740.773
26DAP/20DAPN/AN/A
34DAP/26DAP1.145111
51DAP/34DAP2.13463
52DAP/51DAP1.45421
53DAP/52DAP1.261490.398
55DAP/53DAP0.965420.838
57DAP/55DAP0.874160.658
62DAP/57DAP1.144040.723
68DAP/62DAP1.254230.813
68DAP/14DAP1.162550.146

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.728510.391

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.634870.02
Immature Eggplant/Mature Eggplant2.001040.15
Ripe Pepper/Ripe Tomato0.445020.224
Mature Eggplant/Ripe Tomato0.802481

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.93840.944
1-1-2/M820.998561
12-2/M822.425680.375
12-4/M820.97121
1-3/M820.976891
2-1-1/M820.44295
2-1/M82N/AN/A
2-6/M820.858521
3-2/M820.995251
4-1-1/M820.96691
4-1/M821.064391
4-3-2/M821.656451
4-3/M820.5382
5-3/M821.785940.572
6-2/M821.633040.198
6-3/M821.048761
7-1/M821.274131
7-2/M820.781320.57
9-3-2/M820.89811

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.880370.243
IL2-6/WTpooled1.107330.788
IL7-5/WTpooled1.128820.792
IL7-3/WTpooled0.889481
IL12-4/WTpooled1.075260.785
IL1-4/WTpooled1.092581
WT/WTpooled1.018231

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.472660.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.020671
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.176311
DC3000/delta hrp 24h0.986441

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB2.686990.479

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.326340.196
Exp 36h3.67190.409
Exp 60h2.35140.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.32618
Var 0hN/AN/A
Var 12h I row2-row10.923350.705
Var 12h NI row2-row11.977770.649
Var 36h I row2-row11.248541
Var 36h NI row2-row10.588510.584
Var 60h I row2-row10.721520.287
Var 60h NI row2-row10.780780.408
Time course 0hI-0hNI1.265890.262
Time course 12hI-12hNI1.268440.738
Time course 36hI-36hNI9.09350.004
Time course 60hI-60hNI117.740.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.97420.931
transgenic ySAMdc/azygous control (breaker)1.134051
transgenic ySAMdc/azygous control (red)1.3470.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.154520.14
Manapal/WT (break)1.151431
Manapal/WT (red)0.413330.315