Expression of 1-1-8.3.20.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11946 | 0.602 |
27DAP/17DAP | 1.26528 | 0.749 |
39DAP/27DAP | 0.86656 | 0.537 |
41DAP/39DAP | 1.38003 | 0.286 |
42DAP/41DAP | 0.97272 | 1 |
43DAP/42DAP | 0.9114 | 0.867 |
47DAP/43DAP | 1.06833 | 0.733 |
52DAP/47DAP | 0.89991 | 0.761 |
57DAP/52DAP | 1.08227 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | 0.49275 | |
27DAP/reference | 0.9584 | |
39DAP/reference | 0.22487 | |
41DAP/reference | N/A | N/A |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.90949 | |
47DAP/reference | 0.67922 | |
52DAP/reference | 0.83586 | 0.461 |
57DAP/reference | 0.36099 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16005 | 0.619 |
27DAP/17DAP | 0.88214 | 0.58 |
39DAP/27DAP | 1.0968 | 0.519 |
41DAP/39DAP | 1.49431 | 0.108 |
42DAP/41DAP | 0.86386 | 0.358 |
43DAP/42DAP | 1.22285 | 0.413 |
47DAP/43DAP | 1.22056 | 0.339 |
52DAP/47DAP | 1.32308 | 0.63 |
57DAP/52DAP | 1.01159 | 0.784 |
57DAP/7DAP | 1.89749 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8512 | 0.108 |
17DAP/reference | 0.94982 | 0.389 |
27DAP/reference | 1.00642 | 0.8 |
39DAP/reference | 0.75394 | 0.095 |
41DAP/reference | 0.94546 | 0.298 |
42DAP/reference | 0.71754 | 0.014 |
43DAP/reference | 0.85821 | 0.121 |
47DAP/reference | 1.0108 | 1 |
52DAP/reference | 0.93801 | 0.278 |
57DAP/reference | 1.0449 | 0.907 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83735 | 0.032 |
17DAP/reference | 0.90323 | 0.253 |
27DAP/reference | 0.93968 | 0.452 |
39DAP/reference | 0.82769 | 0.221 |
41DAP/reference | 0.80016 | 0.03 |
42DAP/reference | 0.61263 | |
43DAP/reference | 1.20067 | 0.441 |
47DAP/reference | 0.62034 | |
52DAP/reference | 0.81981 | 0.021 |
57DAP/reference | 1.16057 | 0.552 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80161 | 0.047 |
17DAP/reference | 0.93479 | 0.462 |
27DAP/reference | 0.90643 | 0.14 |
39DAP/reference | 0.94102 | 0.246 |
41DAP/reference | 1.01723 | 1 |
42DAP/reference | 1.11038 | 0.612 |
43DAP/reference | 0.87876 | 0.206 |
47DAP/reference | 0.99218 | 0.538 |
52DAP/reference | 1.37885 | 0.463 |
57DAP/reference | 0.95363 | 0.718 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.86474 | 0.773 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 1.14511 | 1 |
51DAP/34DAP | 2.13463 | |
52DAP/51DAP | 1.4542 | 1 |
53DAP/52DAP | 1.26149 | 0.398 |
55DAP/53DAP | 0.96542 | 0.838 |
57DAP/55DAP | 0.87416 | 0.658 |
62DAP/57DAP | 1.14404 | 0.723 |
68DAP/62DAP | 1.25423 | 0.813 |
68DAP/14DAP | 1.16255 | 0.146 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.72851 | 0.391 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.63487 | 0.02 |
Immature Eggplant/Mature Eggplant | 2.00104 | 0.15 |
Ripe Pepper/Ripe Tomato | 0.44502 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.80248 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9384 | 0.944 |
1-1-2/M82 | 0.99856 | 1 |
12-2/M82 | 2.42568 | 0.375 |
12-4/M82 | 0.9712 | 1 |
1-3/M82 | 0.97689 | 1 |
2-1-1/M82 | 0.44295 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.85852 | 1 |
3-2/M82 | 0.99525 | 1 |
4-1-1/M82 | 0.9669 | 1 |
4-1/M82 | 1.06439 | 1 |
4-3-2/M82 | 1.65645 | 1 |
4-3/M82 | 0.5382 | |
5-3/M82 | 1.78594 | 0.572 |
6-2/M82 | 1.63304 | 0.198 |
6-3/M82 | 1.04876 | 1 |
7-1/M82 | 1.27413 | 1 |
7-2/M82 | 0.78132 | 0.57 |
9-3-2/M82 | 0.8981 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88037 | 0.243 |
IL2-6/WTpooled | 1.10733 | 0.788 |
IL7-5/WTpooled | 1.12882 | 0.792 |
IL7-3/WTpooled | 0.88948 | 1 |
IL12-4/WTpooled | 1.07526 | 0.785 |
IL1-4/WTpooled | 1.09258 | 1 |
WT/WTpooled | 1.01823 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.47266 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02067 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.17631 | 1 |
DC3000/delta hrp 24h | 0.98644 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 2.68699 | 0.479 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.32634 | 0.196 |
Exp 36h | 3.6719 | 0.409 |
Exp 60h | 2.3514 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.32618 | |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.92335 | 0.705 |
Var 12h NI row2-row1 | 1.97777 | 0.649 |
Var 36h I row2-row1 | 1.24854 | 1 |
Var 36h NI row2-row1 | 0.58851 | 0.584 |
Var 60h I row2-row1 | 0.72152 | 0.287 |
Var 60h NI row2-row1 | 0.78078 | 0.408 |
Time course 0hI-0hNI | 1.26589 | 0.262 |
Time course 12hI-12hNI | 1.26844 | 0.738 |
Time course 36hI-36hNI | 9.0935 | 0.004 |
Time course 60hI-60hNI | 117.74 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9742 | 0.931 |
transgenic ySAMdc/azygous control (breaker) | 1.13405 | 1 |
transgenic ySAMdc/azygous control (red) | 1.347 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.15452 | 0.14 |
Manapal/WT (break) | 1.15143 | 1 |
Manapal/WT (red) | 0.41333 | 0.315 |
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