Expression of 1-1-8.3.20.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.132330.697
27DAP/17DAP0.891850.736
39DAP/27DAP0.854190.529
41DAP/39DAP0.957760.659
42DAP/41DAP0.956451
43DAP/42DAP1.061931
47DAP/43DAP1.217430.542
52DAP/47DAP1.321910.667
57DAP/52DAP1.176720.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.057990.567
17DAP/reference0.995810.904
27DAP/reference1.153010.073
39DAP/reference1.063460.524
41DAP/reference1.105720.265
42DAP/reference0.967480.337
43DAP/reference0.952910.5
47DAP/reference0.996280.636
52DAP/reference0.945250.33
57DAP/reference0.696220.086

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.293480.151
27DAP/17DAP1.173720.557
39DAP/27DAP1.116880.707
41DAP/39DAP1.33970.347
42DAP/41DAP0.894720.37
43DAP/42DAP0.834580.235
47DAP/43DAP1.327230.182
52DAP/47DAP1.153190.552
57DAP/52DAP1.461560.036
57DAP/7DAP1.011191

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.982070.445
17DAP/reference0.919390.056
27DAP/reference0.819960.013
39DAP/reference0.879880.027
41DAP/reference0.826760.022
42DAP/reference0.886050.117
43DAP/reference0.858340.04
47DAP/reference0.857270.057
52DAP/reference0.845150.035
57DAP/reference0.929920.08

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.960390.518
17DAP/reference0.925330.253
27DAP/reference0.7930.049
39DAP/reference0.874510.208
41DAP/reference0.81280.052
42DAP/reference0.866940.089
43DAP/reference0.952270.478
47DAP/reference0.864390.047
52DAP/reference0.951270.121
57DAP/reference0.980760.649

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.851030.112
17DAP/reference0.93750.477
27DAP/reference0.868320.042
39DAP/reference0.899870.046
41DAP/reference0.931850.119
42DAP/reference0.771950.059
43DAP/reference0.772280.068
47DAP/reference0.955310.434
52DAP/reference0.960040.623
57DAP/reference0.656370.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.185920.735
26DAP/20DAP1.864580.141
34DAP/26DAP0.759770.219
51DAP/34DAP1.796810.036
52DAP/51DAP0.851571
53DAP/52DAP1.619940.075
55DAP/53DAP1.22810.712
57DAP/55DAP1.085030.975
62DAP/57DAP1.07060.902
68DAP/62DAP1.109930.962
68DAP/14DAP1.252780.676

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.412020.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.738940.206
Mature Green Tomato/Ripe Tomato0.849690.487
Immature Eggplant/Mature Eggplant1.771140.05
Ripe Pepper/Ripe Tomato2.020450.256
Mature Eggplant/Ripe Tomato1.115181

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.87457
1-1-2/M821.00981
12-2/M821.153010.61
12-4/M820.94073
1-3/M820.854040.501
2-1-1/M820.820421
2-1/M82N/AN/A
2-6/M820.98681
3-2/M821.204620.463
4-1-1/M821.111581
4-1/M82N/AN/A
4-3-2/M820.50761
4-3/M820.825620.611
5-3/M821.137231
6-2/M820.732011
6-3/M821.142641
7-1/M821.03534
7-2/M820.968270.578
9-3-2/M820.92305

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.876360.321
IL2-6/WTpooled2.106190.659
IL7-5/WTpooled1.150580.792
IL7-3/WTpooled1.47906
IL12-4/WTpooled1.876130.516
IL1-4/WTpooled0.924790.834
WT/WTpooled1.130691

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.076180.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.03480.921
DC3000/delta hrp 6h0.978280.95
DC3000/delta hrp 12h0.945861
DC3000/delta hrp 24h1.161610.118

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.290750.25
DC3000 delta B/DC3000 delta AB1.256990.169

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.05221
Exp 36h1.660751
Exp 60h1.354281

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.974121
Var 0hN/AN/A
Var 12h I row2-row11.265350.379
Var 12h NI row2-row11.250350.649
Var 36h I row2-row11.056541
Var 36h NI row2-row11.043651
Var 60h I row2-row10.761670.285
Var 60h NI row2-row10.945431
Time course 0hI-0hNI0.946870.548
Time course 12hI-12hNI1.017810.888
Time course 36hI-36hNI1.25550.025
Time course 60hI-60hNI1.874610.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.120230.297
transgenic ySAMdc/azygous control (breaker)1.556740.162
transgenic ySAMdc/azygous control (red)0.892631

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.008130.587

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.168330.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.813670.172
Manapal/WT (break)0.905441
Manapal/WT (red)1.125450.413