Expression of 1-1-8.3.20.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13233 | 0.697 |
27DAP/17DAP | 0.89185 | 0.736 |
39DAP/27DAP | 0.85419 | 0.529 |
41DAP/39DAP | 0.95776 | 0.659 |
42DAP/41DAP | 0.95645 | 1 |
43DAP/42DAP | 1.06193 | 1 |
47DAP/43DAP | 1.21743 | 0.542 |
52DAP/47DAP | 1.32191 | 0.667 |
57DAP/52DAP | 1.17672 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05799 | 0.567 |
17DAP/reference | 0.99581 | 0.904 |
27DAP/reference | 1.15301 | 0.073 |
39DAP/reference | 1.06346 | 0.524 |
41DAP/reference | 1.10572 | 0.265 |
42DAP/reference | 0.96748 | 0.337 |
43DAP/reference | 0.95291 | 0.5 |
47DAP/reference | 0.99628 | 0.636 |
52DAP/reference | 0.94525 | 0.33 |
57DAP/reference | 0.69622 | 0.086 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.29348 | 0.151 |
27DAP/17DAP | 1.17372 | 0.557 |
39DAP/27DAP | 1.11688 | 0.707 |
41DAP/39DAP | 1.3397 | 0.347 |
42DAP/41DAP | 0.89472 | 0.37 |
43DAP/42DAP | 0.83458 | 0.235 |
47DAP/43DAP | 1.32723 | 0.182 |
52DAP/47DAP | 1.15319 | 0.552 |
57DAP/52DAP | 1.46156 | 0.036 |
57DAP/7DAP | 1.01119 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98207 | 0.445 |
17DAP/reference | 0.91939 | 0.056 |
27DAP/reference | 0.81996 | 0.013 |
39DAP/reference | 0.87988 | 0.027 |
41DAP/reference | 0.82676 | 0.022 |
42DAP/reference | 0.88605 | 0.117 |
43DAP/reference | 0.85834 | 0.04 |
47DAP/reference | 0.85727 | 0.057 |
52DAP/reference | 0.84515 | 0.035 |
57DAP/reference | 0.92992 | 0.08 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96039 | 0.518 |
17DAP/reference | 0.92533 | 0.253 |
27DAP/reference | 0.793 | 0.049 |
39DAP/reference | 0.87451 | 0.208 |
41DAP/reference | 0.8128 | 0.052 |
42DAP/reference | 0.86694 | 0.089 |
43DAP/reference | 0.95227 | 0.478 |
47DAP/reference | 0.86439 | 0.047 |
52DAP/reference | 0.95127 | 0.121 |
57DAP/reference | 0.98076 | 0.649 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85103 | 0.112 |
17DAP/reference | 0.9375 | 0.477 |
27DAP/reference | 0.86832 | 0.042 |
39DAP/reference | 0.89987 | 0.046 |
41DAP/reference | 0.93185 | 0.119 |
42DAP/reference | 0.77195 | 0.059 |
43DAP/reference | 0.77228 | 0.068 |
47DAP/reference | 0.95531 | 0.434 |
52DAP/reference | 0.96004 | 0.623 |
57DAP/reference | 0.65637 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.18592 | 0.735 |
26DAP/20DAP | 1.86458 | 0.141 |
34DAP/26DAP | 0.75977 | 0.219 |
51DAP/34DAP | 1.79681 | 0.036 |
52DAP/51DAP | 0.85157 | 1 |
53DAP/52DAP | 1.61994 | 0.075 |
55DAP/53DAP | 1.2281 | 0.712 |
57DAP/55DAP | 1.08503 | 0.975 |
62DAP/57DAP | 1.0706 | 0.902 |
68DAP/62DAP | 1.10993 | 0.962 |
68DAP/14DAP | 1.25278 | 0.676 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.41202 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.73894 | 0.206 |
Mature Green Tomato/Ripe Tomato | 0.84969 | 0.487 |
Immature Eggplant/Mature Eggplant | 1.77114 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.02045 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.11518 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87457 | |
1-1-2/M82 | 1.0098 | 1 |
12-2/M82 | 1.15301 | 0.61 |
12-4/M82 | 0.94073 | |
1-3/M82 | 0.85404 | 0.501 |
2-1-1/M82 | 0.82042 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.9868 | 1 |
3-2/M82 | 1.20462 | 0.463 |
4-1-1/M82 | 1.11158 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.50761 | |
4-3/M82 | 0.82562 | 0.611 |
5-3/M82 | 1.13723 | 1 |
6-2/M82 | 0.73201 | 1 |
6-3/M82 | 1.14264 | 1 |
7-1/M82 | 1.03534 | |
7-2/M82 | 0.96827 | 0.578 |
9-3-2/M82 | 0.92305 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.87636 | 0.321 |
IL2-6/WTpooled | 2.10619 | 0.659 |
IL7-5/WTpooled | 1.15058 | 0.792 |
IL7-3/WTpooled | 1.47906 | |
IL12-4/WTpooled | 1.87613 | 0.516 |
IL1-4/WTpooled | 0.92479 | 0.834 |
WT/WTpooled | 1.13069 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.07618 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0348 | 0.921 |
DC3000/delta hrp 6h | 0.97828 | 0.95 |
DC3000/delta hrp 12h | 0.94586 | 1 |
DC3000/delta hrp 24h | 1.16161 | 0.118 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.29075 | 0.25 |
DC3000 delta B/DC3000 delta AB | 1.25699 | 0.169 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0522 | 1 |
Exp 36h | 1.66075 | 1 |
Exp 60h | 1.35428 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97412 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.26535 | 0.379 |
Var 12h NI row2-row1 | 1.25035 | 0.649 |
Var 36h I row2-row1 | 1.05654 | 1 |
Var 36h NI row2-row1 | 1.04365 | 1 |
Var 60h I row2-row1 | 0.76167 | 0.285 |
Var 60h NI row2-row1 | 0.94543 | 1 |
Time course 0hI-0hNI | 0.94687 | 0.548 |
Time course 12hI-12hNI | 1.01781 | 0.888 |
Time course 36hI-36hNI | 1.2555 | 0.025 |
Time course 60hI-60hNI | 1.87461 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.12023 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 1.55674 | 0.162 |
transgenic ySAMdc/azygous control (red) | 0.89263 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00813 | 0.587 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.16833 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.81367 | 0.172 |
Manapal/WT (break) | 0.90544 | 1 |
Manapal/WT (red) | 1.12545 | 0.413 |
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