Expression of 1-1-8.3.3.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.905570.543
27DAP/17DAP0.927810.869
39DAP/27DAP0.7780.27
41DAP/39DAP0.997360.958
42DAP/41DAP0.841811
43DAP/42DAP1.015040.937
47DAP/43DAP0.893190.645
52DAP/47DAP1.325920.674
57DAP/52DAP0.998260.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.592640.041
17DAP/reference1.161580.442
27DAP/reference1.07210.58
39DAP/reference1.075330.27
41DAP/reference1.20030.91
42DAP/reference1.438510.431
43DAP/reference1.73307
47DAP/reference1.154370.433
52DAP/reference1.277890.043
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.534850.054
27DAP/17DAP0.80050.418
39DAP/27DAP0.928810.52
41DAP/39DAP0.882370.495
42DAP/41DAP1.193310.334
43DAP/42DAP1.098890.478
47DAP/43DAP1.045380.906
52DAP/47DAP1.268710.474
57DAP/52DAP1.501540.284
57DAP/7DAP0.938841

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.322810.05
17DAP/reference1.121460.077
27DAP/reference1.048010.804
39DAP/reference1.033470.779
41DAP/reference0.968520.449
42DAP/reference1.028020.889
43DAP/reference0.867670.042
47DAP/reference1.125260.647
52DAP/reference0.788330.04
57DAP/reference0.963860.396

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.914410.047
17DAP/reference2.490120.011
27DAP/reference1.564960.166
39DAP/reference1.224870.686
41DAP/reference1.568970.007
42DAP/reference1.311720.017
43DAP/reference1.343090.154
47DAP/reference1.129640.079
52DAP/reference1.061140.444
57DAP/reference1.350590.025

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.565880.018
17DAP/reference1.149670.365
27DAP/reference1.176180.1
39DAP/reference1.073820.596
41DAP/reference1.018941
42DAP/reference1.233650.589
43DAP/reference0.864640.125
47DAP/reference0.907580.315
52DAP/reference0.888910.424
57DAP/reference1.107550.614

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP2.83495
26DAP/20DAP1.316361
34DAP/26DAP0.85770.185
51DAP/34DAP1.268990.154
52DAP/51DAP1.13860.638
53DAP/52DAP1.195040.712
55DAP/53DAP0.601290.263
57DAP/55DAP1.089090.898
62DAP/57DAP0.928560.994
68DAP/62DAP0.652550.722
68DAP/14DAP1.623890.487

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.673110.079

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.84170.371
Mature Green Tomato/Ripe Tomato1.735850.023
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato5.772871
Mature Eggplant/Ripe Tomato3.73765

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.01261
1-1-2/M821.122821
12-2/M821.52323
12-4/M820.96581
1-3/M820.70252
2-1-1/M820.56907
2-1/M82N/AN/A
2-6/M820.847311
3-2/M82N/AN/A
4-1-1/M820.802821
4-1/M821.76873
4-3-2/M820.77021
4-3/M820.893810.72
5-3/M820.985521
6-2/M820.52649
6-3/M821.172731
7-1/M820.81287
7-2/M820.94573
9-3-2/M820.718350.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.779290.243
IL2-6/WTpooled1.059490.395
IL7-5/WTpooled1.38095
IL7-3/WTpooled0.952511
IL12-4/WTpooled1.048751
IL1-4/WTpooled1.19611
WT/WTpooled1.025681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.805260.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.18860.692
DC3000/delta hrp 6h1.12031
DC3000/delta hrp 12h1.197051
DC3000/delta hrp 24h0.567860.043

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.455270.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.521731
Exp 36h0.819240.879
Exp 60h1.022381

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.012811
Var 0hN/AN/A
Var 12h I row2-row10.82966
Var 12h NI row2-row11.13215
Var 36h I row2-row11.214080.489
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNI0.850870.162
Time course 12hI-12hNI0.856690.606
Time course 36hI-36hNI0.705650.024
Time course 60hI-60hNI0.197010.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.043790.325
transgenic ySAMdc/azygous control (breaker)1.062941
transgenic ySAMdc/azygous control (red)1.055410.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.990420.712

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.029821

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.162880.09
Manapal/WT (break)1.131221
Manapal/WT (red)1.21720.222