Expression of 1-1-8.3.3.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90557 | 0.543 |
27DAP/17DAP | 0.92781 | 0.869 |
39DAP/27DAP | 0.778 | 0.27 |
41DAP/39DAP | 0.99736 | 0.958 |
42DAP/41DAP | 0.84181 | 1 |
43DAP/42DAP | 1.01504 | 0.937 |
47DAP/43DAP | 0.89319 | 0.645 |
52DAP/47DAP | 1.32592 | 0.674 |
57DAP/52DAP | 0.99826 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.59264 | 0.041 |
17DAP/reference | 1.16158 | 0.442 |
27DAP/reference | 1.0721 | 0.58 |
39DAP/reference | 1.07533 | 0.27 |
41DAP/reference | 1.2003 | 0.91 |
42DAP/reference | 1.43851 | 0.431 |
43DAP/reference | 1.73307 | |
47DAP/reference | 1.15437 | 0.433 |
52DAP/reference | 1.27789 | 0.043 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.53485 | 0.054 |
27DAP/17DAP | 0.8005 | 0.418 |
39DAP/27DAP | 0.92881 | 0.52 |
41DAP/39DAP | 0.88237 | 0.495 |
42DAP/41DAP | 1.19331 | 0.334 |
43DAP/42DAP | 1.09889 | 0.478 |
47DAP/43DAP | 1.04538 | 0.906 |
52DAP/47DAP | 1.26871 | 0.474 |
57DAP/52DAP | 1.50154 | 0.284 |
57DAP/7DAP | 0.93884 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32281 | 0.05 |
17DAP/reference | 1.12146 | 0.077 |
27DAP/reference | 1.04801 | 0.804 |
39DAP/reference | 1.03347 | 0.779 |
41DAP/reference | 0.96852 | 0.449 |
42DAP/reference | 1.02802 | 0.889 |
43DAP/reference | 0.86767 | 0.042 |
47DAP/reference | 1.12526 | 0.647 |
52DAP/reference | 0.78833 | 0.04 |
57DAP/reference | 0.96386 | 0.396 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.91441 | 0.047 |
17DAP/reference | 2.49012 | 0.011 |
27DAP/reference | 1.56496 | 0.166 |
39DAP/reference | 1.22487 | 0.686 |
41DAP/reference | 1.56897 | 0.007 |
42DAP/reference | 1.31172 | 0.017 |
43DAP/reference | 1.34309 | 0.154 |
47DAP/reference | 1.12964 | 0.079 |
52DAP/reference | 1.06114 | 0.444 |
57DAP/reference | 1.35059 | 0.025 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.56588 | 0.018 |
17DAP/reference | 1.14967 | 0.365 |
27DAP/reference | 1.17618 | 0.1 |
39DAP/reference | 1.07382 | 0.596 |
41DAP/reference | 1.01894 | 1 |
42DAP/reference | 1.23365 | 0.589 |
43DAP/reference | 0.86464 | 0.125 |
47DAP/reference | 0.90758 | 0.315 |
52DAP/reference | 0.88891 | 0.424 |
57DAP/reference | 1.10755 | 0.614 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 2.83495 | |
26DAP/20DAP | 1.31636 | 1 |
34DAP/26DAP | 0.8577 | 0.185 |
51DAP/34DAP | 1.26899 | 0.154 |
52DAP/51DAP | 1.1386 | 0.638 |
53DAP/52DAP | 1.19504 | 0.712 |
55DAP/53DAP | 0.60129 | 0.263 |
57DAP/55DAP | 1.08909 | 0.898 |
62DAP/57DAP | 0.92856 | 0.994 |
68DAP/62DAP | 0.65255 | 0.722 |
68DAP/14DAP | 1.62389 | 0.487 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.67311 | 0.079 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.8417 | 0.371 |
Mature Green Tomato/Ripe Tomato | 1.73585 | 0.023 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 5.77287 | 1 |
Mature Eggplant/Ripe Tomato | 3.73765 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0126 | 1 |
1-1-2/M82 | 1.12282 | 1 |
12-2/M82 | 1.52323 | |
12-4/M82 | 0.9658 | 1 |
1-3/M82 | 0.70252 | |
2-1-1/M82 | 0.56907 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.84731 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.80282 | 1 |
4-1/M82 | 1.76873 | |
4-3-2/M82 | 0.77021 | |
4-3/M82 | 0.89381 | 0.72 |
5-3/M82 | 0.98552 | 1 |
6-2/M82 | 0.52649 | |
6-3/M82 | 1.17273 | 1 |
7-1/M82 | 0.81287 | |
7-2/M82 | 0.94573 | |
9-3-2/M82 | 0.71835 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.77929 | 0.243 |
IL2-6/WTpooled | 1.05949 | 0.395 |
IL7-5/WTpooled | 1.38095 | |
IL7-3/WTpooled | 0.95251 | 1 |
IL12-4/WTpooled | 1.04875 | 1 |
IL1-4/WTpooled | 1.1961 | 1 |
WT/WTpooled | 1.02568 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.80526 | 0.341 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.1886 | 0.692 |
DC3000/delta hrp 6h | 1.1203 | 1 |
DC3000/delta hrp 12h | 1.19705 | 1 |
DC3000/delta hrp 24h | 0.56786 | 0.043 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.45527 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.52173 | 1 |
Exp 36h | 0.81924 | 0.879 |
Exp 60h | 1.02238 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01281 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.82966 | |
Var 12h NI row2-row1 | 1.13215 | |
Var 36h I row2-row1 | 1.21408 | 0.489 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | 0.85087 | 0.162 |
Time course 12hI-12hNI | 0.85669 | 0.606 |
Time course 36hI-36hNI | 0.70565 | 0.024 |
Time course 60hI-60hNI | 0.19701 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04379 | 0.325 |
transgenic ySAMdc/azygous control (breaker) | 1.06294 | 1 |
transgenic ySAMdc/azygous control (red) | 1.05541 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99042 | 0.712 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02982 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.16288 | 0.09 |
Manapal/WT (break) | 1.13122 | 1 |
Manapal/WT (red) | 1.2172 | 0.222 |
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