Expression of 1-1-8.3.3.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.373760.725
27DAP/17DAP1.31960.859
39DAP/27DAP0.995520.798
41DAP/39DAP1.156760.742
42DAP/41DAP0.865651
43DAP/42DAP1.206351
47DAP/43DAP1.149370.769
52DAP/47DAP1.318060.491
57DAP/52DAP1.317910.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.2070.041
17DAP/reference1.173230.089
27DAP/reference1.089670.246
39DAP/reference1.056781
41DAP/reference1.218870.365
42DAP/reference1.478010.002
43DAP/reference0.918550.728
47DAP/reference1.28490.001
52DAP/reference1.228540.205
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.807490.277
27DAP/17DAP0.919070.684
39DAP/27DAP1.066850.558
41DAP/39DAP1.176490.909
42DAP/41DAP0.866310.451
43DAP/42DAP1.100490.699
47DAP/43DAP1.307870.889
52DAP/47DAP1.022090.965
57DAP/52DAP0.825470.047
57DAP/7DAP0.9351

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.214530.095
17DAP/reference1.417540.008
27DAP/reference1.420050.023
39DAP/reference1.381940.017
41DAP/reference1.556140.012
42DAP/reference1.443770.018
43DAP/reference1.478660.012
47DAP/reference1.046010.965
52DAP/reference1.475660.019
57DAP/reference1.367320.011

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.10480.308
17DAP/reference1.360330.01
27DAP/reference1.228350.08
39DAP/reference1.096110.29
41DAP/reference1.014781
42DAP/reference0.999450.655
43DAP/reference1.065430.91
47DAP/reference1.057330.311
52DAP/reference1.232260.007
57DAP/reference1.373670.085

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.154720.258
17DAP/reference1.091950.595
27DAP/reference1.417310.029
39DAP/reference1.315580.016
41DAP/reference1.275480.06
42DAP/reference1.24220.074
43DAP/reference1.097820.779
47DAP/reference0.94140.335
52DAP/reference1.503630.179
57DAP/reference0.904450.221

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.00831
26DAP/20DAP1.822380.14
34DAP/26DAP0.669770.247
51DAP/34DAP1.768860.159
52DAP/51DAP0.810291
53DAP/52DAP1.032190.99
55DAP/53DAP1.028431
57DAP/55DAP1.182110.764
62DAP/57DAP1.270540.833
68DAP/62DAP0.715170.406
68DAP/14DAP0.814831

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.336190.954

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.082461
Mature Green Tomato/Ripe Tomato1.18905
Immature Eggplant/Mature Eggplant1.099340.248
Ripe Pepper/Ripe Tomato0.512680.224
Mature Eggplant/Ripe Tomato0.953551

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.88159
12-2/M82N/AN/A
12-4/M820.75489
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.600241
5-3/M821.2118
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.24116
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.177990.225
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.409710.75
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.301371
WT/WTpooled1.80974

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.88620.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.920441
DC3000/delta hrp 6h1.656021
DC3000/delta hrp 12h1.071561
DC3000/delta hrp 24h0.655630.035

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.788740.66
DC3000 delta B/DC3000 delta AB1.058761

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.241911
Exp 36h1.025951
Exp 60h1.107460.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.990931
Var 0h0.879850.933
Var 12h I row2-row10.751710.467
Var 12h NI row2-row11.100061
Var 36h I row2-row10.97561
Var 36h NI row2-row11.184010.482
Var 60h I row2-row10.948690.306
Var 60h NI row2-row11.108990.904
Time course 0hI-0hNI0.936320.656
Time course 12hI-12hNI0.985090.931
Time course 36hI-36hNI0.949030.366
Time course 60hI-60hNI0.710980.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.063040.612
transgenic ySAMdc/azygous control (breaker)0.852040.173
transgenic ySAMdc/azygous control (red)1.154630.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.084310.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.874750.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.150.14
Manapal/WT (break)1.057151
Manapal/WT (red)1.14081