Expression of 1-1-8.3.3.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.37376 | 0.725 |
27DAP/17DAP | 1.3196 | 0.859 |
39DAP/27DAP | 0.99552 | 0.798 |
41DAP/39DAP | 1.15676 | 0.742 |
42DAP/41DAP | 0.86565 | 1 |
43DAP/42DAP | 1.20635 | 1 |
47DAP/43DAP | 1.14937 | 0.769 |
52DAP/47DAP | 1.31806 | 0.491 |
57DAP/52DAP | 1.31791 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.207 | 0.041 |
17DAP/reference | 1.17323 | 0.089 |
27DAP/reference | 1.08967 | 0.246 |
39DAP/reference | 1.05678 | 1 |
41DAP/reference | 1.21887 | 0.365 |
42DAP/reference | 1.47801 | 0.002 |
43DAP/reference | 0.91855 | 0.728 |
47DAP/reference | 1.2849 | 0.001 |
52DAP/reference | 1.22854 | 0.205 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80749 | 0.277 |
27DAP/17DAP | 0.91907 | 0.684 |
39DAP/27DAP | 1.06685 | 0.558 |
41DAP/39DAP | 1.17649 | 0.909 |
42DAP/41DAP | 0.86631 | 0.451 |
43DAP/42DAP | 1.10049 | 0.699 |
47DAP/43DAP | 1.30787 | 0.889 |
52DAP/47DAP | 1.02209 | 0.965 |
57DAP/52DAP | 0.82547 | 0.047 |
57DAP/7DAP | 0.935 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21453 | 0.095 |
17DAP/reference | 1.41754 | 0.008 |
27DAP/reference | 1.42005 | 0.023 |
39DAP/reference | 1.38194 | 0.017 |
41DAP/reference | 1.55614 | 0.012 |
42DAP/reference | 1.44377 | 0.018 |
43DAP/reference | 1.47866 | 0.012 |
47DAP/reference | 1.04601 | 0.965 |
52DAP/reference | 1.47566 | 0.019 |
57DAP/reference | 1.36732 | 0.011 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1048 | 0.308 |
17DAP/reference | 1.36033 | 0.01 |
27DAP/reference | 1.22835 | 0.08 |
39DAP/reference | 1.09611 | 0.29 |
41DAP/reference | 1.01478 | 1 |
42DAP/reference | 0.99945 | 0.655 |
43DAP/reference | 1.06543 | 0.91 |
47DAP/reference | 1.05733 | 0.311 |
52DAP/reference | 1.23226 | 0.007 |
57DAP/reference | 1.37367 | 0.085 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15472 | 0.258 |
17DAP/reference | 1.09195 | 0.595 |
27DAP/reference | 1.41731 | 0.029 |
39DAP/reference | 1.31558 | 0.016 |
41DAP/reference | 1.27548 | 0.06 |
42DAP/reference | 1.2422 | 0.074 |
43DAP/reference | 1.09782 | 0.779 |
47DAP/reference | 0.9414 | 0.335 |
52DAP/reference | 1.50363 | 0.179 |
57DAP/reference | 0.90445 | 0.221 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0083 | 1 |
26DAP/20DAP | 1.82238 | 0.14 |
34DAP/26DAP | 0.66977 | 0.247 |
51DAP/34DAP | 1.76886 | 0.159 |
52DAP/51DAP | 0.81029 | 1 |
53DAP/52DAP | 1.03219 | 0.99 |
55DAP/53DAP | 1.02843 | 1 |
57DAP/55DAP | 1.18211 | 0.764 |
62DAP/57DAP | 1.27054 | 0.833 |
68DAP/62DAP | 0.71517 | 0.406 |
68DAP/14DAP | 0.81483 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.33619 | 0.954 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.08246 | 1 |
Mature Green Tomato/Ripe Tomato | 1.18905 | |
Immature Eggplant/Mature Eggplant | 1.09934 | 0.248 |
Ripe Pepper/Ripe Tomato | 0.51268 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.95355 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.88159 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.75489 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.60024 | 1 |
5-3/M82 | 1.2118 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.24116 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.17799 | 0.225 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.40971 | 0.75 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.30137 | 1 |
WT/WTpooled | 1.80974 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.8862 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92044 | 1 |
DC3000/delta hrp 6h | 1.65602 | 1 |
DC3000/delta hrp 12h | 1.07156 | 1 |
DC3000/delta hrp 24h | 0.65563 | 0.035 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.78874 | 0.66 |
DC3000 delta B/DC3000 delta AB | 1.05876 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.24191 | 1 |
Exp 36h | 1.02595 | 1 |
Exp 60h | 1.10746 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99093 | 1 |
Var 0h | 0.87985 | 0.933 |
Var 12h I row2-row1 | 0.75171 | 0.467 |
Var 12h NI row2-row1 | 1.10006 | 1 |
Var 36h I row2-row1 | 0.9756 | 1 |
Var 36h NI row2-row1 | 1.18401 | 0.482 |
Var 60h I row2-row1 | 0.94869 | 0.306 |
Var 60h NI row2-row1 | 1.10899 | 0.904 |
Time course 0hI-0hNI | 0.93632 | 0.656 |
Time course 12hI-12hNI | 0.98509 | 0.931 |
Time course 36hI-36hNI | 0.94903 | 0.366 |
Time course 60hI-60hNI | 0.71098 | 0.047 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06304 | 0.612 |
transgenic ySAMdc/azygous control (breaker) | 0.85204 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.15463 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08431 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87475 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.15 | 0.14 |
Manapal/WT (break) | 1.05715 | 1 |
Manapal/WT (red) | 1.1408 | 1 |
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