Expression of 1-1-8.3.3.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90639 | 0.503 |
27DAP/17DAP | 1.16678 | 0.854 |
39DAP/27DAP | 0.79529 | 0.487 |
41DAP/39DAP | 1.20775 | 0.619 |
42DAP/41DAP | 1.18665 | 0.933 |
43DAP/42DAP | 1.05425 | 1 |
47DAP/43DAP | 1.16198 | 0.727 |
52DAP/47DAP | 1.29038 | 0.43 |
57DAP/52DAP | 0.98489 | 0.978 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90646 | 0.231 |
17DAP/reference | 0.96557 | 0.701 |
27DAP/reference | 0.87144 | 0.395 |
39DAP/reference | 0.97743 | 0.663 |
41DAP/reference | 1.0767 | 0.48 |
42DAP/reference | 0.9558 | 0.182 |
43DAP/reference | N/A | N/A |
47DAP/reference | 0.95771 | 0.418 |
52DAP/reference | 0.81101 | 0.041 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.84867 | 0.066 |
27DAP/17DAP | 1.00968 | 1 |
39DAP/27DAP | 0.99742 | 1 |
41DAP/39DAP | 1.01518 | 0.914 |
42DAP/41DAP | 0.92388 | 0.391 |
43DAP/42DAP | 1.03727 | 0.664 |
47DAP/43DAP | 0.9817 | 0.911 |
52DAP/47DAP | 1.01024 | 0.991 |
57DAP/52DAP | 1.09887 | 0.601 |
57DAP/7DAP | 1.0513 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.96636 | 0.11 |
17DAP/reference | 1.9088 | 0.006 |
27DAP/reference | 1.49689 | 0.011 |
39DAP/reference | 2.29053 | 0.005 |
41DAP/reference | 1.92087 | 0.014 |
42DAP/reference | 2.69998 | 0.006 |
43DAP/reference | 3.03401 | 0.007 |
47DAP/reference | 1.78764 | 0.195 |
52DAP/reference | 2.46368 | 0.007 |
57DAP/reference | 2.05517 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98904 | 0.848 |
17DAP/reference | 0.90736 | 0.159 |
27DAP/reference | 0.87201 | 0.09 |
39DAP/reference | 0.88969 | 0.065 |
41DAP/reference | 0.83873 | 0.058 |
42DAP/reference | 0.90666 | 0.121 |
43DAP/reference | 0.9159 | 0.25 |
47DAP/reference | 0.86344 | 0.016 |
52DAP/reference | 1.00323 | 1 |
57DAP/reference | 0.96714 | 0.488 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.51566 | 0.038 |
17DAP/reference | 1.19099 | 0.474 |
27DAP/reference | 1.72767 | 0.031 |
39DAP/reference | 1.82969 | 0.028 |
41DAP/reference | 1.64111 | 0.008 |
42DAP/reference | 1.57249 | 0.067 |
43DAP/reference | 1.00737 | 0.66 |
47DAP/reference | 1.04598 | 0.562 |
52DAP/reference | 1.97129 | 0.056 |
57DAP/reference | 1.17572 | 0.954 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05133 | 0.966 |
26DAP/20DAP | 1.21149 | 0.196 |
34DAP/26DAP | 1.03635 | 1 |
51DAP/34DAP | 0.98248 | 0.883 |
52DAP/51DAP | 1.07844 | 0.651 |
53DAP/52DAP | 0.98391 | 0.876 |
55DAP/53DAP | 1.08259 | 0.527 |
57DAP/55DAP | 1.12136 | 0.818 |
62DAP/57DAP | 1.14658 | 0.767 |
68DAP/62DAP | 1.00017 | 0.885 |
68DAP/14DAP | 0.90385 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.91298 | 0.378 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.54894 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.55202 | 0.021 |
Immature Eggplant/Mature Eggplant | 0.14315 | |
Ripe Pepper/Ripe Tomato | 0.47684 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.46714 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98856 | 1 |
1-1-2/M82 | 0.89301 | 0.804 |
12-2/M82 | 1.02962 | 1 |
12-4/M82 | 0.77265 | 0.619 |
1-3/M82 | 0.85497 | |
2-1-1/M82 | 1.00077 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.06336 | |
3-2/M82 | 0.79091 | |
4-1-1/M82 | 1.09471 | 1 |
4-1/M82 | 0.9868 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.88469 | 1 |
5-3/M82 | 1.14677 | 1 |
6-2/M82 | 0.86601 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.08095 | |
7-2/M82 | 1.02899 | 1 |
9-3-2/M82 | 0.96359 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.03885 | 1 |
IL2-6/WTpooled | 1.08897 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.14981 | 1 |
IL12-4/WTpooled | 0.8478 | 0.71 |
IL1-4/WTpooled | 1.18887 | 1 |
WT/WTpooled | 0.79647 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.90191 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.91732 | 1 |
DC3000/delta hrp 6h | 1.00916 | 1 |
DC3000/delta hrp 12h | 0.99227 | 1 |
DC3000/delta hrp 24h | 1.1447 | 0.254 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.66992 | 0.027 |
DC3000 delta B/DC3000 delta AB | 0.6431 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.70818 | 1 |
Exp 36h | 1.23576 | 1 |
Exp 60h | 1.09409 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96271 | 1 |
Var 0h | 0.86956 | 0.291 |
Var 12h I row2-row1 | 0.84998 | 0.357 |
Var 12h NI row2-row1 | 1.07783 | 1 |
Var 36h I row2-row1 | 1.11934 | 0.489 |
Var 36h NI row2-row1 | 1.01255 | 1 |
Var 60h I row2-row1 | 1.13447 | 0.562 |
Var 60h NI row2-row1 | 0.88343 | 0.756 |
Time course 0hI-0hNI | 0.98348 | 0.967 |
Time course 12hI-12hNI | 0.96459 | 0.769 |
Time course 36hI-36hNI | 0.9933 | 0.718 |
Time course 60hI-60hNI | 0.42268 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02709 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 2.83733 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.21311 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03712 | 0.177 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.90957 | 0.308 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.41285 | 0.088 |
Manapal/WT (break) | 1.34405 | 0.14 |
Manapal/WT (red) | 2.36899 | 0.137 |
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