Expression of 1-1-8.3.4.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.85380.364
27DAP/17DAP0.997771
39DAP/27DAP0.814010.462
41DAP/39DAP1.312610.423
42DAP/41DAP1.372790.792
43DAP/42DAP1.186930.785
47DAP/43DAP1.07750.979
52DAP/47DAP1.311160.456
57DAP/52DAP1.043380.985

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.821350.066
17DAP/reference1.017620.606
27DAP/reference1.014190.934
39DAP/reference1.007350.842
41DAP/reference1.031560.963
42DAP/reference0.845060.005
43DAP/reference0.990410.805
47DAP/reference0.915630.083
52DAP/reference0.827490.121
57DAP/reference0.886870.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.768120.068
27DAP/17DAP1.063790.761
39DAP/27DAP0.93310.394
41DAP/39DAP0.994821
42DAP/41DAP1.001520.932
43DAP/42DAP1.129640.176
47DAP/43DAP1.067460.765
52DAP/47DAP0.990430.93
57DAP/52DAP1.026230.838
57DAP/7DAP1.008121

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.986980.613
17DAP/reference0.910180.017
27DAP/reference0.958650.325
39DAP/reference0.987470.64
41DAP/reference0.871060.082
42DAP/reference0.985420.612
43DAP/reference0.855090.105
47DAP/reference0.884310.079
52DAP/reference0.951950.332
57DAP/reference0.98430.477

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.052940.384
17DAP/reference0.829610.046
27DAP/reference0.920710.304
39DAP/reference0.921560.314
41DAP/reference0.807590.177
42DAP/reference0.871080.189
43DAP/reference0.944240.438
47DAP/reference0.974410.473
52DAP/reference0.905260.327
57DAP/reference0.95970.519

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.005071
17DAP/reference0.880520.205
27DAP/reference0.80570.036
39DAP/reference0.876180.133
41DAP/reference0.972330.56
42DAP/reference0.779960.071
43DAP/reference0.792580.088
47DAP/reference0.946510.215
52DAP/reference0.790.125
57DAP/reference0.712760.067

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.991961
26DAP/20DAP1.082260.813
34DAP/26DAP0.839640.399
51DAP/34DAP0.989120.883
52DAP/51DAP1.075440.742
53DAP/52DAP1.096350.882
55DAP/53DAP1.152340.131
57DAP/55DAP1.014361
62DAP/57DAP1.4010.767
68DAP/62DAP1.328260.549
68DAP/14DAP1.196380.915

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.25960.184

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.21391
Mature Green Tomato/Ripe Tomato1.056730.715
Immature Eggplant/Mature Eggplant1.298240.061
Ripe Pepper/Ripe Tomato0.99031
Mature Eggplant/Ripe Tomato0.988721

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.189460.536
1-1-2/M820.827751
12-2/M820.85422
12-4/M821.013761
1-3/M820.59652
2-1-1/M821.11777
2-1/M82N/AN/A
2-6/M821.04021
3-2/M821.01834
4-1-1/M820.76841
4-1/M820.723150.737
4-3-2/M820.96911
4-3/M821.320470.268
5-3/M820.932310.447
6-2/M82N/AN/A
6-3/M820.947281
7-1/M821.20124
7-2/M821.020131
9-3-2/M821.051121

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.66242
IL2-6/WTpooled1.350680.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.903081
IL1-4/WTpooled0.77709
WT/WTpooled0.916951

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.959010.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.947051
DC3000/delta hrp 6h1.085651
DC3000/delta hrp 12h0.897841
DC3000/delta hrp 24h0.990441

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.83528
DC3000 delta B/DC3000 delta AB0.989161

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.819211
Exp 36h1.149711
Exp 60h1.074811

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.106430.421
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.069150.297
transgenic ySAMdc/azygous control (breaker)1.076070.248
transgenic ySAMdc/azygous control (red)0.927381

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.002660.854

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.084171

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.081030.307
Manapal/WT (break)0.999531
Manapal/WT (red)0.841010.183