Expression of 1-1-8.3.4.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8538 | 0.364 |
27DAP/17DAP | 0.99777 | 1 |
39DAP/27DAP | 0.81401 | 0.462 |
41DAP/39DAP | 1.31261 | 0.423 |
42DAP/41DAP | 1.37279 | 0.792 |
43DAP/42DAP | 1.18693 | 0.785 |
47DAP/43DAP | 1.0775 | 0.979 |
52DAP/47DAP | 1.31116 | 0.456 |
57DAP/52DAP | 1.04338 | 0.985 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82135 | 0.066 |
17DAP/reference | 1.01762 | 0.606 |
27DAP/reference | 1.01419 | 0.934 |
39DAP/reference | 1.00735 | 0.842 |
41DAP/reference | 1.03156 | 0.963 |
42DAP/reference | 0.84506 | 0.005 |
43DAP/reference | 0.99041 | 0.805 |
47DAP/reference | 0.91563 | 0.083 |
52DAP/reference | 0.82749 | 0.121 |
57DAP/reference | 0.88687 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76812 | 0.068 |
27DAP/17DAP | 1.06379 | 0.761 |
39DAP/27DAP | 0.9331 | 0.394 |
41DAP/39DAP | 0.99482 | 1 |
42DAP/41DAP | 1.00152 | 0.932 |
43DAP/42DAP | 1.12964 | 0.176 |
47DAP/43DAP | 1.06746 | 0.765 |
52DAP/47DAP | 0.99043 | 0.93 |
57DAP/52DAP | 1.02623 | 0.838 |
57DAP/7DAP | 1.00812 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98698 | 0.613 |
17DAP/reference | 0.91018 | 0.017 |
27DAP/reference | 0.95865 | 0.325 |
39DAP/reference | 0.98747 | 0.64 |
41DAP/reference | 0.87106 | 0.082 |
42DAP/reference | 0.98542 | 0.612 |
43DAP/reference | 0.85509 | 0.105 |
47DAP/reference | 0.88431 | 0.079 |
52DAP/reference | 0.95195 | 0.332 |
57DAP/reference | 0.9843 | 0.477 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05294 | 0.384 |
17DAP/reference | 0.82961 | 0.046 |
27DAP/reference | 0.92071 | 0.304 |
39DAP/reference | 0.92156 | 0.314 |
41DAP/reference | 0.80759 | 0.177 |
42DAP/reference | 0.87108 | 0.189 |
43DAP/reference | 0.94424 | 0.438 |
47DAP/reference | 0.97441 | 0.473 |
52DAP/reference | 0.90526 | 0.327 |
57DAP/reference | 0.9597 | 0.519 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00507 | 1 |
17DAP/reference | 0.88052 | 0.205 |
27DAP/reference | 0.8057 | 0.036 |
39DAP/reference | 0.87618 | 0.133 |
41DAP/reference | 0.97233 | 0.56 |
42DAP/reference | 0.77996 | 0.071 |
43DAP/reference | 0.79258 | 0.088 |
47DAP/reference | 0.94651 | 0.215 |
52DAP/reference | 0.79 | 0.125 |
57DAP/reference | 0.71276 | 0.067 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99196 | 1 |
26DAP/20DAP | 1.08226 | 0.813 |
34DAP/26DAP | 0.83964 | 0.399 |
51DAP/34DAP | 0.98912 | 0.883 |
52DAP/51DAP | 1.07544 | 0.742 |
53DAP/52DAP | 1.09635 | 0.882 |
55DAP/53DAP | 1.15234 | 0.131 |
57DAP/55DAP | 1.01436 | 1 |
62DAP/57DAP | 1.401 | 0.767 |
68DAP/62DAP | 1.32826 | 0.549 |
68DAP/14DAP | 1.19638 | 0.915 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.2596 | 0.184 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.21391 | |
Mature Green Tomato/Ripe Tomato | 1.05673 | 0.715 |
Immature Eggplant/Mature Eggplant | 1.29824 | 0.061 |
Ripe Pepper/Ripe Tomato | 0.9903 | 1 |
Mature Eggplant/Ripe Tomato | 0.98872 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.18946 | 0.536 |
1-1-2/M82 | 0.82775 | 1 |
12-2/M82 | 0.85422 | |
12-4/M82 | 1.01376 | 1 |
1-3/M82 | 0.59652 | |
2-1-1/M82 | 1.11777 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.04021 | |
3-2/M82 | 1.01834 | |
4-1-1/M82 | 0.76841 | |
4-1/M82 | 0.72315 | 0.737 |
4-3-2/M82 | 0.96911 | |
4-3/M82 | 1.32047 | 0.268 |
5-3/M82 | 0.93231 | 0.447 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.94728 | 1 |
7-1/M82 | 1.20124 | |
7-2/M82 | 1.02013 | 1 |
9-3-2/M82 | 1.05112 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.66242 | |
IL2-6/WTpooled | 1.35068 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.90308 | 1 |
IL1-4/WTpooled | 0.77709 | |
WT/WTpooled | 0.91695 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95901 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94705 | 1 |
DC3000/delta hrp 6h | 1.08565 | 1 |
DC3000/delta hrp 12h | 0.89784 | 1 |
DC3000/delta hrp 24h | 0.99044 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.83528 | |
DC3000 delta B/DC3000 delta AB | 0.98916 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.81921 | 1 |
Exp 36h | 1.14971 | 1 |
Exp 60h | 1.07481 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.10643 | 0.421 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06915 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 1.07607 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.92738 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00266 | 0.854 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.08417 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.08103 | 0.307 |
Manapal/WT (break) | 0.99953 | 1 |
Manapal/WT (red) | 0.84101 | 0.183 |
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