Expression of 1-1-8.3.6.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.02890.811
27DAP/17DAP0.805720.585
39DAP/27DAP1.088871
41DAP/39DAP0.733720.21
42DAP/41DAP0.762920.262
43DAP/42DAP1.152920.976
47DAP/43DAP1.027060.804
52DAP/47DAP0.984940.781
57DAP/52DAP1.712830.82

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.731410.024
17DAP/reference0.929620.342
27DAP/reference1.005421
39DAP/reference1.056990.262
41DAP/reference0.844880.039
42DAP/reference0.947390.25
43DAP/reference0.981120.728
47DAP/reference1.061880.91
52DAP/reference1.079770.633
57DAP/reference1.162990.032

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.196721
27DAP/17DAP1.218930.324
39DAP/27DAP0.967210.859
41DAP/39DAP1.477160.029
42DAP/41DAP0.865660.556
43DAP/42DAP1.263630.162
47DAP/43DAP1.004880.939
52DAP/47DAP1.212960.609
57DAP/52DAP1.239040.543
57DAP/7DAP0.951221

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.091870.625
17DAP/reference0.768470.011
27DAP/reference0.962030.43
39DAP/reference1.065161
41DAP/reference0.926250.203
42DAP/reference1.041040.791
43DAP/reference1.089081
47DAP/reference0.869210.128
52DAP/reference1.182470.13
57DAP/reference1.038231

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.992740.884
17DAP/reference0.902010.208
27DAP/reference0.89580.24
39DAP/reference0.986730.569
41DAP/reference1.033820.944
42DAP/reference1.094250.543
43DAP/reference0.955490.468
47DAP/reference1.286840.009
52DAP/reference1.042841
57DAP/reference0.781050.099

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.964390.455
17DAP/reference0.849130.221
27DAP/reference0.983660.624
39DAP/reference1.227410.052
41DAP/reference1.054230.397
42DAP/reference0.988680.816
43DAP/reference1.007470.796
47DAP/reference0.981510.558
52DAP/reference0.96380.718
57DAP/reference1.23940.048

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.153080.966
26DAP/20DAP3.056110.493
34DAP/26DAP1.32171
51DAP/34DAP1.418620.829
52DAP/51DAP0.691860.064
53DAP/52DAP1.430390.712
55DAP/53DAP0.904860.686
57DAP/55DAP1.199180.96
62DAP/57DAP1.639050.393
68DAP/62DAP1.353870.944
68DAP/14DAP1.121280.739

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.934410.576

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato3.747210.064
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato8.05326
Mature Eggplant/Ripe Tomato8.189911

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.12844
12-2/M82N/AN/A
12-4/M820.971710.25
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.565430.321
IL2-6/WTpooled0.857660.473
IL7-5/WTpooled1.46396
IL7-3/WTpooled1.152171
IL12-4/WTpooled0.978781
IL1-4/WTpooled0.813480.457
WT/WTpooled1.030131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.811850.256

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.052130.823
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.254441
DC3000/delta hrp 24h0.433920.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.893140.328
Exp 36h1.340571
Exp 60h1.252760.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.898041
Var 0h1.014141
Var 12h I row2-row10.877430.565
Var 12h NI row2-row11.199681
Var 36h I row2-row10.719691
Var 36h NI row2-row12.15571
Var 60h I row2-row11.089910.562
Var 60h NI row2-row11.17860.904
Time course 0hI-0hNI0.909260.438
Time course 12hI-12hNI0.994031
Time course 36hI-36hNI0.756350.023
Time course 60hI-60hNI0.244820.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.941560.324
transgenic ySAMdc/azygous control (breaker)0.722750.139
transgenic ySAMdc/azygous control (red)1.182250.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.993280.631

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.893910.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.74441
Manapal/WT (break)0.756411
Manapal/WT (red)1.336870.222