Expression of 1-1-8.3.6.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0289 | 0.811 |
27DAP/17DAP | 0.80572 | 0.585 |
39DAP/27DAP | 1.08887 | 1 |
41DAP/39DAP | 0.73372 | 0.21 |
42DAP/41DAP | 0.76292 | 0.262 |
43DAP/42DAP | 1.15292 | 0.976 |
47DAP/43DAP | 1.02706 | 0.804 |
52DAP/47DAP | 0.98494 | 0.781 |
57DAP/52DAP | 1.71283 | 0.82 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73141 | 0.024 |
17DAP/reference | 0.92962 | 0.342 |
27DAP/reference | 1.00542 | 1 |
39DAP/reference | 1.05699 | 0.262 |
41DAP/reference | 0.84488 | 0.039 |
42DAP/reference | 0.94739 | 0.25 |
43DAP/reference | 0.98112 | 0.728 |
47DAP/reference | 1.06188 | 0.91 |
52DAP/reference | 1.07977 | 0.633 |
57DAP/reference | 1.16299 | 0.032 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19672 | 1 |
27DAP/17DAP | 1.21893 | 0.324 |
39DAP/27DAP | 0.96721 | 0.859 |
41DAP/39DAP | 1.47716 | 0.029 |
42DAP/41DAP | 0.86566 | 0.556 |
43DAP/42DAP | 1.26363 | 0.162 |
47DAP/43DAP | 1.00488 | 0.939 |
52DAP/47DAP | 1.21296 | 0.609 |
57DAP/52DAP | 1.23904 | 0.543 |
57DAP/7DAP | 0.95122 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09187 | 0.625 |
17DAP/reference | 0.76847 | 0.011 |
27DAP/reference | 0.96203 | 0.43 |
39DAP/reference | 1.06516 | 1 |
41DAP/reference | 0.92625 | 0.203 |
42DAP/reference | 1.04104 | 0.791 |
43DAP/reference | 1.08908 | 1 |
47DAP/reference | 0.86921 | 0.128 |
52DAP/reference | 1.18247 | 0.13 |
57DAP/reference | 1.03823 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99274 | 0.884 |
17DAP/reference | 0.90201 | 0.208 |
27DAP/reference | 0.8958 | 0.24 |
39DAP/reference | 0.98673 | 0.569 |
41DAP/reference | 1.03382 | 0.944 |
42DAP/reference | 1.09425 | 0.543 |
43DAP/reference | 0.95549 | 0.468 |
47DAP/reference | 1.28684 | 0.009 |
52DAP/reference | 1.04284 | 1 |
57DAP/reference | 0.78105 | 0.099 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96439 | 0.455 |
17DAP/reference | 0.84913 | 0.221 |
27DAP/reference | 0.98366 | 0.624 |
39DAP/reference | 1.22741 | 0.052 |
41DAP/reference | 1.05423 | 0.397 |
42DAP/reference | 0.98868 | 0.816 |
43DAP/reference | 1.00747 | 0.796 |
47DAP/reference | 0.98151 | 0.558 |
52DAP/reference | 0.9638 | 0.718 |
57DAP/reference | 1.2394 | 0.048 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.15308 | 0.966 |
26DAP/20DAP | 3.05611 | 0.493 |
34DAP/26DAP | 1.3217 | 1 |
51DAP/34DAP | 1.41862 | 0.829 |
52DAP/51DAP | 0.69186 | 0.064 |
53DAP/52DAP | 1.43039 | 0.712 |
55DAP/53DAP | 0.90486 | 0.686 |
57DAP/55DAP | 1.19918 | 0.96 |
62DAP/57DAP | 1.63905 | 0.393 |
68DAP/62DAP | 1.35387 | 0.944 |
68DAP/14DAP | 1.12128 | 0.739 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.93441 | 0.576 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 3.74721 | 0.064 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 8.05326 | |
Mature Eggplant/Ripe Tomato | 8.18991 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.12844 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.97171 | 0.25 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.56543 | 0.321 |
IL2-6/WTpooled | 0.85766 | 0.473 |
IL7-5/WTpooled | 1.46396 | |
IL7-3/WTpooled | 1.15217 | 1 |
IL12-4/WTpooled | 0.97878 | 1 |
IL1-4/WTpooled | 0.81348 | 0.457 |
WT/WTpooled | 1.03013 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.81185 | 0.256 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05213 | 0.823 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.25444 | 1 |
DC3000/delta hrp 24h | 0.43392 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89314 | 0.328 |
Exp 36h | 1.34057 | 1 |
Exp 60h | 1.25276 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.89804 | 1 |
Var 0h | 1.01414 | 1 |
Var 12h I row2-row1 | 0.87743 | 0.565 |
Var 12h NI row2-row1 | 1.19968 | 1 |
Var 36h I row2-row1 | 0.71969 | 1 |
Var 36h NI row2-row1 | 2.1557 | 1 |
Var 60h I row2-row1 | 1.08991 | 0.562 |
Var 60h NI row2-row1 | 1.1786 | 0.904 |
Time course 0hI-0hNI | 0.90926 | 0.438 |
Time course 12hI-12hNI | 0.99403 | 1 |
Time course 36hI-36hNI | 0.75635 | 0.023 |
Time course 60hI-60hNI | 0.24482 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94156 | 0.324 |
transgenic ySAMdc/azygous control (breaker) | 0.72275 | 0.139 |
transgenic ySAMdc/azygous control (red) | 1.18225 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99328 | 0.631 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.89391 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.7444 | 1 |
Manapal/WT (break) | 0.75641 | 1 |
Manapal/WT (red) | 1.33687 | 0.222 |
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