Expression of 1-1-8.3.6.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88637 | 0.464 |
27DAP/17DAP | 1.13745 | 0.849 |
39DAP/27DAP | 0.79919 | 0.41 |
41DAP/39DAP | 1.37063 | 0.676 |
42DAP/41DAP | 1.4103 | 0.485 |
43DAP/42DAP | 1.03618 | 1 |
47DAP/43DAP | 0.77761 | 0.382 |
52DAP/47DAP | 1.23634 | 0.651 |
57DAP/52DAP | 0.97667 | 0.974 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87453 | 0.035 |
17DAP/reference | 0.98753 | 0.777 |
27DAP/reference | 0.99562 | 0.822 |
39DAP/reference | 0.98574 | 0.779 |
41DAP/reference | 1.10209 | 0.421 |
42DAP/reference | 0.89857 | 0.003 |
43DAP/reference | 0.91889 | 0.234 |
47DAP/reference | 0.94706 | 0.083 |
52DAP/reference | 0.8267 | 0.091 |
57DAP/reference | 0.96071 | 0.324 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94392 | 0.578 |
27DAP/17DAP | 1.03827 | 0.909 |
39DAP/27DAP | 1.06846 | 0.56 |
41DAP/39DAP | 1.03856 | 0.883 |
42DAP/41DAP | 0.98145 | 0.791 |
43DAP/42DAP | 1.09736 | 0.25 |
47DAP/43DAP | 0.95387 | 0.764 |
52DAP/47DAP | 1.07359 | 0.718 |
57DAP/52DAP | 0.95076 | 0.628 |
57DAP/7DAP | 1.02031 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77218 | 0.104 |
17DAP/reference | 0.95129 | 0.338 |
27DAP/reference | 1.01332 | 1 |
39DAP/reference | 0.83933 | 0.073 |
41DAP/reference | 0.76135 | 0.049 |
42DAP/reference | 1.02593 | 1 |
43DAP/reference | 0.9862 | 0.58 |
47DAP/reference | 0.82183 | 0.128 |
52DAP/reference | 1.13809 | 0.491 |
57DAP/reference | 1.03042 | 0.746 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99807 | 0.93 |
17DAP/reference | 0.98365 | 0.611 |
27DAP/reference | 0.90665 | 0.229 |
39DAP/reference | 0.98791 | 0.554 |
41DAP/reference | 0.91511 | 0.121 |
42DAP/reference | 0.9528 | 0.321 |
43DAP/reference | 1.26371 | 0.429 |
47DAP/reference | 1.02716 | 0.841 |
52DAP/reference | 0.91877 | 0.101 |
57DAP/reference | 1.03447 | 0.737 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88213 | 0.158 |
17DAP/reference | 0.90992 | 0.275 |
27DAP/reference | 0.90198 | 0.302 |
39DAP/reference | 1.04141 | 0.528 |
41DAP/reference | 0.81315 | 0.167 |
42DAP/reference | 0.94171 | 0.552 |
43DAP/reference | 0.76159 | 0.016 |
47DAP/reference | 0.95765 | 0.452 |
52DAP/reference | 0.7452 | 0.172 |
57DAP/reference | 0.88312 | 0.093 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02452 | 0.966 |
26DAP/20DAP | 0.79655 | 0.317 |
34DAP/26DAP | 1.23251 | 0.819 |
51DAP/34DAP | 1.12291 | 0.159 |
52DAP/51DAP | 1.09013 | 0.689 |
53DAP/52DAP | 1.0226 | 0.91 |
55DAP/53DAP | 1.05765 | 0.876 |
57DAP/55DAP | 1.08574 | 0.301 |
62DAP/57DAP | 1.08514 | 0.902 |
68DAP/62DAP | 1.1213 | 0.754 |
68DAP/14DAP | 1.48715 | 0.419 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.62441 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.87206 | 0.517 |
Mature Green Tomato/Ripe Tomato | 0.99253 | 0.66 |
Immature Eggplant/Mature Eggplant | 1.2457 | 0.379 |
Ripe Pepper/Ripe Tomato | 1.25881 | 1 |
Mature Eggplant/Ripe Tomato | 1.46538 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05165 | |
1-1-2/M82 | 1.09465 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.72077 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.88696 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.0489 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.71853 | |
4-3/M82 | 1.25991 | |
5-3/M82 | 0.93711 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.02281 | 1 |
7-2/M82 | 1.32831 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.48502 | 0.277 |
IL2-6/WTpooled | 1.35742 | 0.419 |
IL7-5/WTpooled | 1.16876 | |
IL7-3/WTpooled | 1.21659 | 1 |
IL12-4/WTpooled | 1.25193 | 0.481 |
IL1-4/WTpooled | 1.02457 | 1 |
WT/WTpooled | 0.95878 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.19254 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.89802 | 0.941 |
DC3000/delta hrp 6h | 1.55385 | 1 |
DC3000/delta hrp 12h | 1.06971 | 1 |
DC3000/delta hrp 24h | 0.98341 | 0.934 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.84632 | 0.024 |
DC3000 delta B/DC3000 delta AB | 1.08956 | 0.51 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02382 | 1 |
Var 0h | 0.98873 | 1 |
Var 12h I row2-row1 | 1.01815 | 0.795 |
Var 12h NI row2-row1 | 0.88655 | 0.713 |
Var 36h I row2-row1 | 0.80343 | 0.805 |
Var 36h NI row2-row1 | 0.9251 | 0.584 |
Var 60h I row2-row1 | 1.15762 | 1 |
Var 60h NI row2-row1 | 1.23067 | 0.904 |
Time course 0hI-0hNI | 1.09948 | 0.603 |
Time course 12hI-12hNI | 0.9767 | 0.87 |
Time course 36hI-36hNI | 0.88076 | 0.039 |
Time course 60hI-60hNI | 0.89374 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.82944 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 1.4692 | 1 |
transgenic ySAMdc/azygous control (red) | 1.4551 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98419 | 0.353 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99494 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.26781 | 0.307 |
Manapal/WT (break) | 1.08485 | 1 |
Manapal/WT (red) | 1.73176 | 0.15 |
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