Expression of 1-1-8.3.6.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.886370.464
27DAP/17DAP1.137450.849
39DAP/27DAP0.799190.41
41DAP/39DAP1.370630.676
42DAP/41DAP1.41030.485
43DAP/42DAP1.036181
47DAP/43DAP0.777610.382
52DAP/47DAP1.236340.651
57DAP/52DAP0.976670.974

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.874530.035
17DAP/reference0.987530.777
27DAP/reference0.995620.822
39DAP/reference0.985740.779
41DAP/reference1.102090.421
42DAP/reference0.898570.003
43DAP/reference0.918890.234
47DAP/reference0.947060.083
52DAP/reference0.82670.091
57DAP/reference0.960710.324

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.943920.578
27DAP/17DAP1.038270.909
39DAP/27DAP1.068460.56
41DAP/39DAP1.038560.883
42DAP/41DAP0.981450.791
43DAP/42DAP1.097360.25
47DAP/43DAP0.953870.764
52DAP/47DAP1.073590.718
57DAP/52DAP0.950760.628
57DAP/7DAP1.020311

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.772180.104
17DAP/reference0.951290.338
27DAP/reference1.013321
39DAP/reference0.839330.073
41DAP/reference0.761350.049
42DAP/reference1.025931
43DAP/reference0.98620.58
47DAP/reference0.821830.128
52DAP/reference1.138090.491
57DAP/reference1.030420.746

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.998070.93
17DAP/reference0.983650.611
27DAP/reference0.906650.229
39DAP/reference0.987910.554
41DAP/reference0.915110.121
42DAP/reference0.95280.321
43DAP/reference1.263710.429
47DAP/reference1.027160.841
52DAP/reference0.918770.101
57DAP/reference1.034470.737

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.882130.158
17DAP/reference0.909920.275
27DAP/reference0.901980.302
39DAP/reference1.041410.528
41DAP/reference0.813150.167
42DAP/reference0.941710.552
43DAP/reference0.761590.016
47DAP/reference0.957650.452
52DAP/reference0.74520.172
57DAP/reference0.883120.093

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.024520.966
26DAP/20DAP0.796550.317
34DAP/26DAP1.232510.819
51DAP/34DAP1.122910.159
52DAP/51DAP1.090130.689
53DAP/52DAP1.02260.91
55DAP/53DAP1.057650.876
57DAP/55DAP1.085740.301
62DAP/57DAP1.085140.902
68DAP/62DAP1.12130.754
68DAP/14DAP1.487150.419

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.624410.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.872060.517
Mature Green Tomato/Ripe Tomato0.992530.66
Immature Eggplant/Mature Eggplant1.24570.379
Ripe Pepper/Ripe Tomato1.258811
Mature Eggplant/Ripe Tomato1.465380.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.05165
1-1-2/M821.09465
12-2/M82N/AN/A
12-4/M820.72077
1-3/M82N/AN/A
2-1-1/M820.88696
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.0489
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.71853
4-3/M821.25991
5-3/M820.937111
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.022811
7-2/M821.32831
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.485020.277
IL2-6/WTpooled1.357420.419
IL7-5/WTpooled1.16876
IL7-3/WTpooled1.216591
IL12-4/WTpooled1.251930.481
IL1-4/WTpooled1.024571
WT/WTpooled0.958781

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.192540.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.898020.941
DC3000/delta hrp 6h1.553851
DC3000/delta hrp 12h1.069711
DC3000/delta hrp 24h0.983410.934

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.846320.024
DC3000 delta B/DC3000 delta AB1.089560.51

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.023821
Var 0h0.988731
Var 12h I row2-row11.018150.795
Var 12h NI row2-row10.886550.713
Var 36h I row2-row10.803430.805
Var 36h NI row2-row10.92510.584
Var 60h I row2-row11.157621
Var 60h NI row2-row11.230670.904
Time course 0hI-0hNI1.099480.603
Time course 12hI-12hNI0.97670.87
Time course 36hI-36hNI0.880760.039
Time course 60hI-60hNI0.893740.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.829440.297
transgenic ySAMdc/azygous control (breaker)1.46921
transgenic ySAMdc/azygous control (red)1.45510.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.984190.353

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.994941

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.267810.307
Manapal/WT (break)1.084851
Manapal/WT (red)1.731760.15