Expression of 1-1-8.3.7.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1405 | 0.681 |
27DAP/17DAP | 0.85802 | 0.626 |
39DAP/27DAP | 1.31231 | 0.395 |
41DAP/39DAP | 0.94476 | 0.743 |
42DAP/41DAP | 1.37326 | 0.702 |
43DAP/42DAP | 1.04487 | 0.948 |
47DAP/43DAP | 0.9531 | 0.815 |
52DAP/47DAP | 0.96867 | 0.875 |
57DAP/52DAP | 1.28446 | 0.826 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98328 | 0.601 |
17DAP/reference | 0.77122 | 0.013 |
27DAP/reference | 0.92883 | 0.385 |
39DAP/reference | 0.83138 | 0.029 |
41DAP/reference | 0.64003 | 0.008 |
42DAP/reference | 0.9305 | 0.134 |
43DAP/reference | 0.85321 | 0.033 |
47DAP/reference | 0.95999 | 0.322 |
52DAP/reference | 1.2227 | 0.335 |
57DAP/reference | 1.41525 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.20392 | 0.372 |
27DAP/17DAP | 0.8548 | 0.475 |
39DAP/27DAP | 0.78637 | 0.113 |
41DAP/39DAP | 1.36417 | 0.439 |
42DAP/41DAP | 1.09388 | 0.999 |
43DAP/42DAP | 0.78474 | 0.029 |
47DAP/43DAP | 1.14885 | 0.601 |
52DAP/47DAP | 1.03052 | 0.941 |
57DAP/52DAP | 1.24119 | 0.272 |
57DAP/7DAP | 0.90139 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08789 | 0.318 |
17DAP/reference | 1.28672 | 0.147 |
27DAP/reference | 1.03326 | 0.974 |
39DAP/reference | 0.91176 | 0.264 |
41DAP/reference | 1.13157 | 0.26 |
42DAP/reference | 0.95468 | 0.415 |
43DAP/reference | 0.93948 | 0.292 |
47DAP/reference | 1.03686 | 0.948 |
52DAP/reference | 1.36435 | 0.247 |
57DAP/reference | 1.03342 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93749 | 0.548 |
17DAP/reference | 0.9764 | 0.561 |
27DAP/reference | 1.40522 | 0.092 |
39DAP/reference | 1.23466 | 0.324 |
41DAP/reference | 1.30886 | 0.099 |
42DAP/reference | 1.10764 | 0.569 |
43DAP/reference | 0.89858 | 0.298 |
47DAP/reference | 0.99021 | 0.625 |
52DAP/reference | 0.99929 | 0.713 |
57DAP/reference | 0.89968 | 0.278 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15224 | 0.433 |
17DAP/reference | 0.96708 | 0.592 |
27DAP/reference | 0.93456 | 0.442 |
39DAP/reference | 1.1507 | 0.318 |
41DAP/reference | 1.04153 | 0.818 |
42DAP/reference | 1.49561 | 0.018 |
43DAP/reference | 1.57947 | 0.023 |
47DAP/reference | 1.16495 | 0.196 |
52DAP/reference | 1.41697 | 0.102 |
57DAP/reference | 1.89612 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1477 | 0.966 |
26DAP/20DAP | 1.44328 | 0.278 |
34DAP/26DAP | 0.7615 | 0.783 |
51DAP/34DAP | N/A | N/A |
52DAP/51DAP | 1.22994 | 0.42 |
53DAP/52DAP | 1.02503 | 0.99 |
55DAP/53DAP | 1.07506 | 1 |
57DAP/55DAP | 1.05095 | 1 |
62DAP/57DAP | 1.20648 | 0.185 |
68DAP/62DAP | 1.83376 | 0.265 |
68DAP/14DAP | 1.4719 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.80932 | 0.025 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.95261 | 0.563 |
Mature Green Tomato/Ripe Tomato | 2.19768 | 0.028 |
Immature Eggplant/Mature Eggplant | 0.63637 | 0.069 |
Ripe Pepper/Ripe Tomato | 1.4226 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.73985 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.76911 | |
1-1-2/M82 | 0.56663 | |
12-2/M82 | 0.77422 | 0.74 |
12-4/M82 | 0.85819 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.11508 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.04724 | |
4-3/M82 | 1.23044 | |
5-3/M82 | 1.07441 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.88987 | |
7-1/M82 | 0.67722 | 0.509 |
7-2/M82 | 1.2094 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.21795 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0534 | 0.914 |
DC3000/delta hrp 6h | 0.98876 | 0.95 |
DC3000/delta hrp 12h | 0.98551 | 1 |
DC3000/delta hrp 24h | 0.96962 | 0.818 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.13813 | |
DC3000 delta B/DC3000 delta AB | 0.75252 | 0.121 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99174 | 1 |
Var 0h | 0.79222 | 1 |
Var 12h I row2-row1 | 0.96018 | 0.948 |
Var 12h NI row2-row1 | 1.1093 | 1 |
Var 36h I row2-row1 | 1.3095 | 0.309 |
Var 36h NI row2-row1 | 1.46429 | 1 |
Var 60h I row2-row1 | 0.88114 | 0.832 |
Var 60h NI row2-row1 | 1.15155 | 1 |
Time course 0hI-0hNI | 0.81157 | 0.063 |
Time course 12hI-12hNI | 0.99529 | 1 |
Time course 36hI-36hNI | 1.38187 | 0.08 |
Time course 60hI-60hNI | 0.99146 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.11613 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 1.44734 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.13748 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.41075 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.81294 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.95365 | 1 |
Manapal/WT (break) | 0.94803 | 1 |
Manapal/WT (red) | 1.04754 | 1 |
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