Expression of 1-1-8.3.7.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.14050.681
27DAP/17DAP0.858020.626
39DAP/27DAP1.312310.395
41DAP/39DAP0.944760.743
42DAP/41DAP1.373260.702
43DAP/42DAP1.044870.948
47DAP/43DAP0.95310.815
52DAP/47DAP0.968670.875
57DAP/52DAP1.284460.826

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.983280.601
17DAP/reference0.771220.013
27DAP/reference0.928830.385
39DAP/reference0.831380.029
41DAP/reference0.640030.008
42DAP/reference0.93050.134
43DAP/reference0.853210.033
47DAP/reference0.959990.322
52DAP/reference1.22270.335
57DAP/reference1.415250.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.203920.372
27DAP/17DAP0.85480.475
39DAP/27DAP0.786370.113
41DAP/39DAP1.364170.439
42DAP/41DAP1.093880.999
43DAP/42DAP0.784740.029
47DAP/43DAP1.148850.601
52DAP/47DAP1.030520.941
57DAP/52DAP1.241190.272
57DAP/7DAP0.901391

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.087890.318
17DAP/reference1.286720.147
27DAP/reference1.033260.974
39DAP/reference0.911760.264
41DAP/reference1.131570.26
42DAP/reference0.954680.415
43DAP/reference0.939480.292
47DAP/reference1.036860.948
52DAP/reference1.364350.247
57DAP/reference1.033421

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.937490.548
17DAP/reference0.97640.561
27DAP/reference1.405220.092
39DAP/reference1.234660.324
41DAP/reference1.308860.099
42DAP/reference1.107640.569
43DAP/reference0.898580.298
47DAP/reference0.990210.625
52DAP/reference0.999290.713
57DAP/reference0.899680.278

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.152240.433
17DAP/reference0.967080.592
27DAP/reference0.934560.442
39DAP/reference1.15070.318
41DAP/reference1.041530.818
42DAP/reference1.495610.018
43DAP/reference1.579470.023
47DAP/reference1.164950.196
52DAP/reference1.416970.102
57DAP/reference1.896120.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.14770.966
26DAP/20DAP1.443280.278
34DAP/26DAP0.76150.783
51DAP/34DAPN/AN/A
52DAP/51DAP1.229940.42
53DAP/52DAP1.025030.99
55DAP/53DAP1.075061
57DAP/55DAP1.050951
62DAP/57DAP1.206480.185
68DAP/62DAP1.833760.265
68DAP/14DAP1.47191

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.809320.025

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.952610.563
Mature Green Tomato/Ripe Tomato2.197680.028
Immature Eggplant/Mature Eggplant0.636370.069
Ripe Pepper/Ripe Tomato1.42260.258
Mature Eggplant/Ripe Tomato0.739851

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.76911
1-1-2/M820.56663
12-2/M820.774220.74
12-4/M820.85819
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.11508
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.04724
4-3/M821.23044
5-3/M821.074411
6-2/M82N/AN/A
6-3/M820.88987
7-1/M820.677220.509
7-2/M821.2094
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.217950.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.05340.914
DC3000/delta hrp 6h0.988760.95
DC3000/delta hrp 12h0.985511
DC3000/delta hrp 24h0.969620.818

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.13813
DC3000 delta B/DC3000 delta AB0.752520.121

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.991741
Var 0h0.792221
Var 12h I row2-row10.960180.948
Var 12h NI row2-row11.10931
Var 36h I row2-row11.30950.309
Var 36h NI row2-row11.464291
Var 60h I row2-row10.881140.832
Var 60h NI row2-row11.151551
Time course 0hI-0hNI0.811570.063
Time course 12hI-12hNI0.995291
Time course 36hI-36hNI1.381870.08
Time course 60hI-60hNI0.991461

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.116130.699
transgenic ySAMdc/azygous control (breaker)1.447340.248
transgenic ySAMdc/azygous control (red)1.137480.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.410750.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.812940.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.953651
Manapal/WT (break)0.948031
Manapal/WT (red)1.047541