Expression of 1-1-8.3.8.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.745070.182
27DAP/17DAP1.233980.832
39DAP/27DAP2.320170.08
41DAP/39DAP2.203860.103
42DAP/41DAP2.307630.018
43DAP/42DAP1.744130.703
47DAP/43DAP1.00270.902
52DAP/47DAP0.526550.056
57DAP/52DAP1.306940.764

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.858830.075
17DAP/reference1.040060.492
27DAP/reference0.997560.847
39DAP/reference1.178250.029
41DAP/reference1.060040.516
42DAP/reference1.007430.628
43DAP/reference0.96360.631
47DAP/reference0.96450.345
52DAP/reference0.808580.105
57DAP/reference0.928370.308

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.137690.525
27DAP/17DAP1.020960.957
39DAP/27DAP1.385350.128
41DAP/39DAP0.741340.024
42DAP/41DAP1.347990.159
43DAP/42DAP2.19280.016
47DAP/43DAP0.830860.029
52DAP/47DAP1.125550.616
57DAP/52DAP1.01961
57DAP/7DAP1.558171

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.154160.545
17DAP/reference0.80438
27DAP/reference0.733560.117
39DAP/reference1.16770.634
41DAP/reference1.094671
42DAP/reference0.913740.355
43DAP/reference1.446330.023
47DAP/reference1.138210.195
52DAP/reference0.66050.254
57DAP/reference1.260210.25

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.010080.93
17DAP/reference1.040210.471
27DAP/reference1.06661
39DAP/reference0.980550.526
41DAP/reference1.009060.735
42DAP/reference1.008810.723
43DAP/reference1.448170.192
47DAP/reference1.140240.009
52DAP/reference1.268720.014
57DAP/reference1.16180.269

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.790190.112
17DAP/reference1.038970.685
27DAP/reference1.26152
39DAP/reference1.33230.157
41DAP/reference1.49818
42DAP/reference0.777080.018
43DAP/reference0.721280.02
47DAP/reference1.087890.443
52DAP/reference1.173290.146
57DAP/reference0.871230.234

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.993561
26DAP/20DAP1.098060.962
34DAP/26DAP0.777930.148
51DAP/34DAP1.266770.281
52DAP/51DAP0.95031
53DAP/52DAP1.014161
55DAP/53DAP1.214150.566
57DAP/55DAP1.046940.969
62DAP/57DAP1.300830.515
68DAP/62DAP0.738610.152
68DAP/14DAP0.887491

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.53965

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.973160.765
Mature Green Tomato/Ripe Tomato0.211890.017
Immature Eggplant/Mature Eggplant1.19820.085
Ripe Pepper/Ripe Tomato2.015360.256
Mature Eggplant/Ripe Tomato2.423620.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.901140.402
1-1-2/M820.94827
12-2/M820.988661
12-4/M821.423411
1-3/M820.854450.441
2-1-1/M821.191090.375
2-1/M82N/AN/A
2-6/M820.968421
3-2/M821.109550.84
4-1-1/M820.835781
4-1/M821.245670.512
4-3-2/M821.114270.508
4-3/M820.877620.72
5-3/M821.034061
6-2/M820.89988
6-3/M821.032861
7-1/M820.908991
7-2/M820.979131
9-3-2/M820.580720.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.000521
IL2-6/WTpooled1.109320.531
IL7-5/WTpooled0.824081
IL7-3/WTpooled1.098651
IL12-4/WTpooled0.762190.581
IL1-4/WTpooled1.159381
WT/WTpooled0.95681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.978791

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.036180.921
DC3000/delta hrp 6h0.966810.95
DC3000/delta hrp 12h1.165961
DC3000/delta hrp 24h1.045320.567

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.06713
DC3000 delta B/DC3000 delta AB1.370520.163

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.042471
Exp 36h1.11621
Exp 60h1.130560.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.967251
Var 0h0.827230.933
Var 12h I row2-row11.068650.613
Var 12h NI row2-row11.111121
Var 36h I row2-row10.871280.805
Var 36h NI row2-row11.106451
Var 60h I row2-row10.837640.306
Var 60h NI row2-row11.044950.904
Time course 0hI-0hNI1.134140.537
Time course 12hI-12hNI1.159750.104
Time course 36hI-36hNI1.18380.012
Time course 60hI-60hNI1.897520.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.02660.699
transgenic ySAMdc/azygous control (breaker)0.964731
transgenic ySAMdc/azygous control (red)1.045810.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.060550.063

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.736610.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.027151
Manapal/WT (break)1.077661
Manapal/WT (red)0.96290.728