Expression of 1-1-8.3.8.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.24250.348
27DAP/17DAP1.318630.788
39DAP/27DAP0.766330.352
41DAP/39DAP1.043740.663
42DAP/41DAP1.297940.681
43DAP/42DAP1.095281
47DAP/43DAP1.037431
52DAP/47DAP0.926280.752
57DAP/52DAP1.007390.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.856720.045
17DAP/reference0.896510.079
27DAP/reference1.063730.498
39DAP/reference0.903790.267
41DAP/reference1.039560.91
42DAP/reference0.804950.002
43DAP/reference0.873020.18
47DAP/reference0.843210.027
52DAP/reference0.891230.244
57DAP/reference0.982970.58

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.14991
27DAP/17DAP1.05410.995
39DAP/27DAP0.994751
41DAP/39DAP0.950070.861
42DAP/41DAP1.309860.694
43DAP/42DAP0.974260.774
47DAP/43DAP0.795770.41
52DAP/47DAP0.830770.254
57DAP/52DAP1.195470.442
57DAP/7DAP1.25870.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.837980.104
17DAP/reference0.956310.338
27DAP/reference1.025650.664
39DAP/reference1.015731
41DAP/reference1.11271
42DAP/reference1.061630.534
43DAP/reference0.85720.034
47DAP/reference0.906020.293
52DAP/reference1.13030.401
57DAP/reference1.040141

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.927110.426
17DAP/reference0.856140.038
27DAP/reference0.803230.069
39DAP/reference0.825510.054
41DAP/reference0.980330.493
42DAP/reference0.8520.073
43DAP/reference1.142450.892
47DAP/reference1.017410.943
52DAP/reference0.89080.171
57DAP/reference0.838370.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.802990.098
17DAP/reference1.017931
27DAP/reference1.018430.883
39DAP/reference1.077660.39
41DAP/reference0.924690.293
42DAP/reference1.067950.576
43DAP/reference0.809180.081
47DAP/reference1.087860.207
52DAP/reference0.93840.551
57DAP/reference1.365440.73

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.10780.966
26DAP/20DAP0.896740.512
34DAP/26DAP1.032031
51DAP/34DAP1.526740.053
52DAP/51DAP0.928511
53DAP/52DAP1.342560.082
55DAP/53DAP1.045190.869
57DAP/55DAP1.029570.986
62DAP/57DAP0.882820.681
68DAP/62DAP1.558390.331
68DAP/14DAP1.680480.153

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.878890.399

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.408090.078
Mature Green Tomato/Ripe Tomato0.90860.446
Immature Eggplant/Mature Eggplant1.703660.061
Ripe Pepper/Ripe Tomato1.569990.258
Mature Eggplant/Ripe Tomato0.932671

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.744430.605
1-1-2/M821.00747
12-2/M82N/AN/A
12-4/M821.166831
1-3/M82N/AN/A
2-1-1/M820.61229
2-1/M82N/AN/A
2-6/M820.72178
3-2/M820.906241
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.9871
4-3/M821.196841
5-3/M821.086121
6-2/M820.94515
6-3/M820.96597
7-1/M821.19439
7-2/M82N/AN/A
9-3-2/M820.915050.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.97352
IL1-4/WTpooledN/AN/A
WT/WTpooled1.180840.686

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.949861

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.259630.503
DC3000/delta hrp 6h1.00720.95
DC3000/delta hrp 12h0.997391
DC3000/delta hrp 24h1.124930.553

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.990051
DC3000 delta B/DC3000 delta AB0.984970.936

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.823431
Exp 36h1.322761
Exp 60h1.235180.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.980111
Var 0h0.826740.933
Var 12h I row2-row10.95220.39
Var 12h NI row2-row11.095481
Var 36h I row2-row11.053671
Var 36h NI row2-row11.077371
Var 60h I row2-row10.851040.285
Var 60h NI row2-row11.143520.904
Time course 0hI-0hNI1.031890.867
Time course 12hI-12hNI0.907510.188
Time course 36hI-36hNI0.919830.202
Time course 60hI-60hNI0.586550.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.129370.268
transgenic ySAMdc/azygous control (breaker)0.807690.15
transgenic ySAMdc/azygous control (red)0.948361

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.032790.247

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.074481

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.803261
Manapal/WT (break)0.951261
Manapal/WT (red)1.252771