Expression of 1-1-8.3.8.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2425 | 0.348 |
27DAP/17DAP | 1.31863 | 0.788 |
39DAP/27DAP | 0.76633 | 0.352 |
41DAP/39DAP | 1.04374 | 0.663 |
42DAP/41DAP | 1.29794 | 0.681 |
43DAP/42DAP | 1.09528 | 1 |
47DAP/43DAP | 1.03743 | 1 |
52DAP/47DAP | 0.92628 | 0.752 |
57DAP/52DAP | 1.00739 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85672 | 0.045 |
17DAP/reference | 0.89651 | 0.079 |
27DAP/reference | 1.06373 | 0.498 |
39DAP/reference | 0.90379 | 0.267 |
41DAP/reference | 1.03956 | 0.91 |
42DAP/reference | 0.80495 | 0.002 |
43DAP/reference | 0.87302 | 0.18 |
47DAP/reference | 0.84321 | 0.027 |
52DAP/reference | 0.89123 | 0.244 |
57DAP/reference | 0.98297 | 0.58 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1499 | 1 |
27DAP/17DAP | 1.0541 | 0.995 |
39DAP/27DAP | 0.99475 | 1 |
41DAP/39DAP | 0.95007 | 0.861 |
42DAP/41DAP | 1.30986 | 0.694 |
43DAP/42DAP | 0.97426 | 0.774 |
47DAP/43DAP | 0.79577 | 0.41 |
52DAP/47DAP | 0.83077 | 0.254 |
57DAP/52DAP | 1.19547 | 0.442 |
57DAP/7DAP | 1.2587 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83798 | 0.104 |
17DAP/reference | 0.95631 | 0.338 |
27DAP/reference | 1.02565 | 0.664 |
39DAP/reference | 1.01573 | 1 |
41DAP/reference | 1.1127 | 1 |
42DAP/reference | 1.06163 | 0.534 |
43DAP/reference | 0.8572 | 0.034 |
47DAP/reference | 0.90602 | 0.293 |
52DAP/reference | 1.1303 | 0.401 |
57DAP/reference | 1.04014 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92711 | 0.426 |
17DAP/reference | 0.85614 | 0.038 |
27DAP/reference | 0.80323 | 0.069 |
39DAP/reference | 0.82551 | 0.054 |
41DAP/reference | 0.98033 | 0.493 |
42DAP/reference | 0.852 | 0.073 |
43DAP/reference | 1.14245 | 0.892 |
47DAP/reference | 1.01741 | 0.943 |
52DAP/reference | 0.8908 | 0.171 |
57DAP/reference | 0.83837 | 0.135 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80299 | 0.098 |
17DAP/reference | 1.01793 | 1 |
27DAP/reference | 1.01843 | 0.883 |
39DAP/reference | 1.07766 | 0.39 |
41DAP/reference | 0.92469 | 0.293 |
42DAP/reference | 1.06795 | 0.576 |
43DAP/reference | 0.80918 | 0.081 |
47DAP/reference | 1.08786 | 0.207 |
52DAP/reference | 0.9384 | 0.551 |
57DAP/reference | 1.36544 | 0.73 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1078 | 0.966 |
26DAP/20DAP | 0.89674 | 0.512 |
34DAP/26DAP | 1.03203 | 1 |
51DAP/34DAP | 1.52674 | 0.053 |
52DAP/51DAP | 0.92851 | 1 |
53DAP/52DAP | 1.34256 | 0.082 |
55DAP/53DAP | 1.04519 | 0.869 |
57DAP/55DAP | 1.02957 | 0.986 |
62DAP/57DAP | 0.88282 | 0.681 |
68DAP/62DAP | 1.55839 | 0.331 |
68DAP/14DAP | 1.68048 | 0.153 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.87889 | 0.399 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.40809 | 0.078 |
Mature Green Tomato/Ripe Tomato | 0.9086 | 0.446 |
Immature Eggplant/Mature Eggplant | 1.70366 | 0.061 |
Ripe Pepper/Ripe Tomato | 1.56999 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.93267 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.74443 | 0.605 |
1-1-2/M82 | 1.00747 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.16683 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.61229 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.72178 | |
3-2/M82 | 0.90624 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.987 | 1 |
4-3/M82 | 1.19684 | 1 |
5-3/M82 | 1.08612 | 1 |
6-2/M82 | 0.94515 | |
6-3/M82 | 0.96597 | |
7-1/M82 | 1.19439 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.91505 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.97352 | |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | 1.18084 | 0.686 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94986 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.25963 | 0.503 |
DC3000/delta hrp 6h | 1.0072 | 0.95 |
DC3000/delta hrp 12h | 0.99739 | 1 |
DC3000/delta hrp 24h | 1.12493 | 0.553 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.99005 | 1 |
DC3000 delta B/DC3000 delta AB | 0.98497 | 0.936 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.82343 | 1 |
Exp 36h | 1.32276 | 1 |
Exp 60h | 1.23518 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98011 | 1 |
Var 0h | 0.82674 | 0.933 |
Var 12h I row2-row1 | 0.9522 | 0.39 |
Var 12h NI row2-row1 | 1.09548 | 1 |
Var 36h I row2-row1 | 1.05367 | 1 |
Var 36h NI row2-row1 | 1.07737 | 1 |
Var 60h I row2-row1 | 0.85104 | 0.285 |
Var 60h NI row2-row1 | 1.14352 | 0.904 |
Time course 0hI-0hNI | 1.03189 | 0.867 |
Time course 12hI-12hNI | 0.90751 | 0.188 |
Time course 36hI-36hNI | 0.91983 | 0.202 |
Time course 60hI-60hNI | 0.58655 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.12937 | 0.268 |
transgenic ySAMdc/azygous control (breaker) | 0.80769 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.94836 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03279 | 0.247 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.07448 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.80326 | 1 |
Manapal/WT (break) | 0.95126 | 1 |
Manapal/WT (red) | 1.25277 | 1 |
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