Expression of 1-1-8.3.9.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.821120.498
27DAP/17DAP1.434540.849
39DAP/27DAP1.627040.476
41DAP/39DAP0.724460.389
42DAP/41DAP1.083441
43DAP/42DAP1.3071
47DAP/43DAP1.561880.756
52DAP/47DAP1.768130.456
57DAP/52DAP1.451790.964

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.778890.177
17DAP/reference1.35729
27DAP/reference0.86056
39DAP/reference0.965870.874
41DAP/reference1.804190.019
42DAP/reference1.049010.547
43DAP/referenceN/AN/A
47DAP/reference1.078640.602
52DAP/reference0.87011
57DAP/reference0.923350.395

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.641870.289
27DAP/17DAP2.179360.923
39DAP/27DAPN/AN/A
41DAP/39DAP1.87937
42DAP/41DAP0.671050.064
43DAP/42DAP3.80376
47DAP/43DAP1.399340.54
52DAP/47DAP2.96974
57DAP/52DAP0.908480.753
57DAP/7DAP0.699791

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.82796
17DAP/reference1.000870.599
27DAP/referenceN/AN/A
39DAP/reference2.93744
41DAP/referenceN/AN/A
42DAP/reference1.501130.006
43DAP/reference0.67002
47DAP/reference1.593850.537
52DAP/reference1.84598
57DAP/referenceN/AN/A

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.902670.487
17DAP/reference1.09060.518
27DAP/reference1.287250.769
39DAP/reference1.183110.316
41DAP/reference0.638060.033
42DAP/reference0.976240.594
43DAP/reference0.987120.62
47DAP/reference1.295470.353
52DAP/reference1.601890.559
57DAP/reference0.867380.226

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.049061
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/reference0.81563
41DAP/reference1.70639
42DAP/reference0.39126
43DAP/reference1.56566
47DAP/reference1.91010.009
52DAP/reference0.65017
57DAP/reference1.01179

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.085951
26DAP/20DAP2.922820.099
34DAP/26DAP1.597150.154
51DAP/34DAP1.282730.883
52DAP/51DAP0.786541
53DAP/52DAP0.967330.854
55DAP/53DAP0.795540.5
57DAP/55DAP19.4994
62DAP/57DAP0.447540.016
68DAP/62DAP3.27056
68DAP/14DAP1.8144

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.14624

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.430380.358
IL7-5/WTpooled1.01294
IL7-3/WTpooled0.783861
IL12-4/WTpooled1.108761
IL1-4/WTpooled0.74969
WT/WTpooled1.158321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.958180.457
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A