Expression of 1-1-8.4.1.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.124960.602
27DAP/17DAP0.965330.899
39DAP/27DAP0.880270.583
41DAP/39DAP0.932490.772
42DAP/41DAP0.867820.774
43DAP/42DAP1.102690.923
47DAP/43DAP1.16210.459
52DAP/47DAP0.828970.564
57DAP/52DAP0.85630.845

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.010260.806
17DAP/reference0.919760.278
27DAP/reference1.09410.435
39DAP/reference1.029450.664
41DAP/reference1.097010.241
42DAP/reference1.281650.003
43DAP/reference1.123640.425
47DAP/reference1.251940.002
52DAP/reference1.456370.017
57DAP/reference1.274140.159

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.893310.47
27DAP/17DAP0.723880.614
39DAP/27DAP1.081770.718
41DAP/39DAP0.977370.959
42DAP/41DAP1.440470.065
43DAP/42DAP1.186040.324
47DAP/43DAP0.848950.447
52DAP/47DAP1.255040.422
57DAP/52DAP1.033241
57DAP/7DAP1.076371

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.877440.157
17DAP/reference0.844010.031
27DAP/reference0.949660.185
39DAP/reference0.83270.011
41DAP/reference0.854640.103
42DAP/reference0.628350.01
43DAP/reference0.748740.019
47DAP/reference1.241310.525
52DAP/reference0.764280.061
57DAP/reference0.74250.021

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.308110.249
17DAP/reference1.238590.131
27DAP/reference1.401890.015
39DAP/reference1.517550.013
41DAP/reference1.649810.008
42DAP/reference1.303230.008
43DAP/reference1.260450.164
47DAP/reference1.217450.013
52DAP/reference1.682640.01
57DAP/reference1.226830.123

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.900050.045
17DAP/reference1.06430.792
27DAP/reference0.955590.416
39DAP/reference0.903450.133
41DAP/reference1.049860.961
42DAP/reference1.274970.364
43DAP/reference1.282370.58
47DAP/reference1.760690.01
52DAP/reference1.051330.941
57DAP/reference1.882850.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.04790.966
26DAP/20DAP1.2607
34DAP/26DAP0.831790.777
51DAP/34DAP1.467940.04
52DAP/51DAP1.200150.556
53DAP/52DAP0.831950.79
55DAP/53DAP0.875020.135
57DAP/55DAP0.80920.246
62DAP/57DAP0.865910.681
68DAP/62DAP1.549670.448
68DAP/14DAP1.46530.028

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.847370.269

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.870380.364
Mature Green Tomato/Ripe Tomato2.78231
Immature Eggplant/Mature Eggplant0.890140.159
Ripe Pepper/Ripe Tomato3.945731
Mature Eggplant/Ripe Tomato2.017461

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.075961
1-1-2/M820.912881
12-2/M821.150511
12-4/M821.0987
1-3/M820.884710.501
2-1-1/M821.20639
2-1/M821.66668
2-6/M821.078790.695
3-2/M820.73337
4-1-1/M820.903911
4-1/M821.59422
4-3-2/M821.02901
4-3/M820.947471
5-3/M820.936321
6-2/M820.712980.444
6-3/M821.048161
7-1/M821.05601
7-2/M820.96231
9-3-2/M820.88057

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.5871
IL2-6/WTpooled0.635020.473
IL7-5/WTpooled1.56324
IL7-3/WTpooled0.919511
IL12-4/WTpooled0.750280.581
IL1-4/WTpooled1.189931
WT/WTpooled0.965911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.005231

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.097890.894
DC3000/delta hrp 6h1.119151
DC3000/delta hrp 12h1.060441
DC3000/delta hrp 24h1.037040.71

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.75619
DC3000 delta B/DC3000 delta AB1.68381

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.125151
Exp 36h0.732180.661
Exp 60h0.748050.266

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row10.80874
Var 12h NI row2-row10.84661
Var 36h I row2-row11.080630.339
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row11.00739
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNI1.202220.799
Time course 12hI-12hNI1.00951
Time course 36hI-36hNI0.762160.023
Time course 60hI-60hNI0.567720.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.960580.3
transgenic ySAMdc/azygous control (breaker)0.754890.173
transgenic ySAMdc/azygous control (red)1.148420.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.034370.142

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.422820.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.547210.105
Manapal/WT (break)1.334610.381
Manapal/WT (red)0.840570.424