Expression of 1-1-8.4.1.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12496 | 0.602 |
27DAP/17DAP | 0.96533 | 0.899 |
39DAP/27DAP | 0.88027 | 0.583 |
41DAP/39DAP | 0.93249 | 0.772 |
42DAP/41DAP | 0.86782 | 0.774 |
43DAP/42DAP | 1.10269 | 0.923 |
47DAP/43DAP | 1.1621 | 0.459 |
52DAP/47DAP | 0.82897 | 0.564 |
57DAP/52DAP | 0.8563 | 0.845 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01026 | 0.806 |
17DAP/reference | 0.91976 | 0.278 |
27DAP/reference | 1.0941 | 0.435 |
39DAP/reference | 1.02945 | 0.664 |
41DAP/reference | 1.09701 | 0.241 |
42DAP/reference | 1.28165 | 0.003 |
43DAP/reference | 1.12364 | 0.425 |
47DAP/reference | 1.25194 | 0.002 |
52DAP/reference | 1.45637 | 0.017 |
57DAP/reference | 1.27414 | 0.159 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89331 | 0.47 |
27DAP/17DAP | 0.72388 | 0.614 |
39DAP/27DAP | 1.08177 | 0.718 |
41DAP/39DAP | 0.97737 | 0.959 |
42DAP/41DAP | 1.44047 | 0.065 |
43DAP/42DAP | 1.18604 | 0.324 |
47DAP/43DAP | 0.84895 | 0.447 |
52DAP/47DAP | 1.25504 | 0.422 |
57DAP/52DAP | 1.03324 | 1 |
57DAP/7DAP | 1.07637 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87744 | 0.157 |
17DAP/reference | 0.84401 | 0.031 |
27DAP/reference | 0.94966 | 0.185 |
39DAP/reference | 0.8327 | 0.011 |
41DAP/reference | 0.85464 | 0.103 |
42DAP/reference | 0.62835 | 0.01 |
43DAP/reference | 0.74874 | 0.019 |
47DAP/reference | 1.24131 | 0.525 |
52DAP/reference | 0.76428 | 0.061 |
57DAP/reference | 0.7425 | 0.021 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30811 | 0.249 |
17DAP/reference | 1.23859 | 0.131 |
27DAP/reference | 1.40189 | 0.015 |
39DAP/reference | 1.51755 | 0.013 |
41DAP/reference | 1.64981 | 0.008 |
42DAP/reference | 1.30323 | 0.008 |
43DAP/reference | 1.26045 | 0.164 |
47DAP/reference | 1.21745 | 0.013 |
52DAP/reference | 1.68264 | 0.01 |
57DAP/reference | 1.22683 | 0.123 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90005 | 0.045 |
17DAP/reference | 1.0643 | 0.792 |
27DAP/reference | 0.95559 | 0.416 |
39DAP/reference | 0.90345 | 0.133 |
41DAP/reference | 1.04986 | 0.961 |
42DAP/reference | 1.27497 | 0.364 |
43DAP/reference | 1.28237 | 0.58 |
47DAP/reference | 1.76069 | 0.01 |
52DAP/reference | 1.05133 | 0.941 |
57DAP/reference | 1.88285 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0479 | 0.966 |
26DAP/20DAP | 1.2607 | |
34DAP/26DAP | 0.83179 | 0.777 |
51DAP/34DAP | 1.46794 | 0.04 |
52DAP/51DAP | 1.20015 | 0.556 |
53DAP/52DAP | 0.83195 | 0.79 |
55DAP/53DAP | 0.87502 | 0.135 |
57DAP/55DAP | 0.8092 | 0.246 |
62DAP/57DAP | 0.86591 | 0.681 |
68DAP/62DAP | 1.54967 | 0.448 |
68DAP/14DAP | 1.4653 | 0.028 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.84737 | 0.269 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.87038 | 0.364 |
Mature Green Tomato/Ripe Tomato | 2.78231 | |
Immature Eggplant/Mature Eggplant | 0.89014 | 0.159 |
Ripe Pepper/Ripe Tomato | 3.94573 | 1 |
Mature Eggplant/Ripe Tomato | 2.01746 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07596 | 1 |
1-1-2/M82 | 0.91288 | 1 |
12-2/M82 | 1.15051 | 1 |
12-4/M82 | 1.0987 | |
1-3/M82 | 0.88471 | 0.501 |
2-1-1/M82 | 1.20639 | |
2-1/M82 | 1.66668 | |
2-6/M82 | 1.07879 | 0.695 |
3-2/M82 | 0.73337 | |
4-1-1/M82 | 0.90391 | 1 |
4-1/M82 | 1.59422 | |
4-3-2/M82 | 1.02901 | |
4-3/M82 | 0.94747 | 1 |
5-3/M82 | 0.93632 | 1 |
6-2/M82 | 0.71298 | 0.444 |
6-3/M82 | 1.04816 | 1 |
7-1/M82 | 1.05601 | |
7-2/M82 | 0.9623 | 1 |
9-3-2/M82 | 0.88057 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.5871 | |
IL2-6/WTpooled | 0.63502 | 0.473 |
IL7-5/WTpooled | 1.56324 | |
IL7-3/WTpooled | 0.91951 | 1 |
IL12-4/WTpooled | 0.75028 | 0.581 |
IL1-4/WTpooled | 1.18993 | 1 |
WT/WTpooled | 0.96591 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00523 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09789 | 0.894 |
DC3000/delta hrp 6h | 1.11915 | 1 |
DC3000/delta hrp 12h | 1.06044 | 1 |
DC3000/delta hrp 24h | 1.03704 | 0.71 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.75619 | |
DC3000 delta B/DC3000 delta AB | 1.68381 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.12515 | 1 |
Exp 36h | 0.73218 | 0.661 |
Exp 60h | 0.74805 | 0.266 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.80874 | |
Var 12h NI row2-row1 | 0.84661 | |
Var 36h I row2-row1 | 1.08063 | 0.339 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | 1.00739 | |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | 1.20222 | 0.799 |
Time course 12hI-12hNI | 1.0095 | 1 |
Time course 36hI-36hNI | 0.76216 | 0.023 |
Time course 60hI-60hNI | 0.56772 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96058 | 0.3 |
transgenic ySAMdc/azygous control (breaker) | 0.75489 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.14842 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03437 | 0.142 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.42282 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.54721 | 0.105 |
Manapal/WT (break) | 1.33461 | 0.381 |
Manapal/WT (red) | 0.84057 | 0.424 |
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