Expression of 1-1-8.4.1.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.81193 | 0.278 |
27DAP/17DAP | 1.28274 | 0.686 |
39DAP/27DAP | 2.31336 | 0.047 |
41DAP/39DAP | 1.00857 | 1 |
42DAP/41DAP | 0.92999 | 1 |
43DAP/42DAP | 0.92891 | 0.874 |
47DAP/43DAP | 0.90586 | 0.68 |
52DAP/47DAP | 1.22181 | 0.707 |
57DAP/52DAP | 0.79574 | 0.509 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26665 | 0.11 |
17DAP/reference | 0.78217 | 0.012 |
27DAP/reference | 0.97958 | 0.668 |
39DAP/reference | 0.83678 | 0.1 |
41DAP/reference | 0.79675 | 0.085 |
42DAP/reference | 1.43029 | 0.001 |
43DAP/reference | 1.02241 | 0.982 |
47DAP/reference | 0.92332 | 0.055 |
52DAP/reference | 0.96378 | 0.449 |
57DAP/reference | 1.16458 | 0.159 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83461 | 0.057 |
27DAP/17DAP | 1.07839 | 0.951 |
39DAP/27DAP | 1.05132 | 0.548 |
41DAP/39DAP | 1.0646 | 0.861 |
42DAP/41DAP | 1.02352 | 1 |
43DAP/42DAP | 1.32808 | 0.016 |
47DAP/43DAP | 0.99134 | 0.961 |
52DAP/47DAP | 0.98444 | 0.925 |
57DAP/52DAP | 1.21023 | 0.357 |
57DAP/7DAP | 0.72443 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.49783 | 0.035 |
17DAP/reference | 1.28425 | 0.03 |
27DAP/reference | 1.2297 | 0.049 |
39DAP/reference | 1.07473 | 0.74 |
41DAP/reference | 1.68247 | 0.014 |
42DAP/reference | 1.76991 | 0.007 |
43DAP/reference | 2.86267 | 0.006 |
47DAP/reference | 1.84804 | 0.028 |
52DAP/reference | 2.64753 | 0.007 |
57DAP/reference | 2.03272 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96185 | 0.607 |
17DAP/reference | 1.45566 | 0.027 |
27DAP/reference | 1.55426 | 0.026 |
39DAP/reference | 1.37276 | 0.016 |
41DAP/reference | 1.44715 | 0.014 |
42DAP/reference | 1.21988 | 0.015 |
43DAP/reference | 1.32999 | 0.104 |
47DAP/reference | 1.36466 | 0.023 |
52DAP/reference | 1.04952 | 0.747 |
57DAP/reference | 1.67961 | 0.017 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25933 | 0.028 |
17DAP/reference | 0.90232 | 0.358 |
27DAP/reference | 1.50053 | 0.023 |
39DAP/reference | 1.25898 | 0.017 |
41DAP/reference | 1.19485 | 0.06 |
42DAP/reference | 1.35404 | 0.052 |
43DAP/reference | 1.48372 | 0.012 |
47DAP/reference | 1.30718 | 0.147 |
52DAP/reference | 1.29372 | 0.15 |
57DAP/reference | 1.24033 | 0.171 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.34166 | 1 |
26DAP/20DAP | 1.92488 | 0.176 |
34DAP/26DAP | 0.75886 | 0.093 |
51DAP/34DAP | 1.26138 | 0.073 |
52DAP/51DAP | 0.9064 | 1 |
53DAP/52DAP | 0.63982 | 0.049 |
55DAP/53DAP | 0.81581 | 0.021 |
57DAP/55DAP | 0.9128 | 0.601 |
62DAP/57DAP | 1.27093 | 0.034 |
68DAP/62DAP | 1.88132 | 0.206 |
68DAP/14DAP | 1.69361 | 0.074 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.16134 | 0.043 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.40046 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.75171 | 0.134 |
Ripe Pepper/Ripe Tomato | 0.11418 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.68981 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.86767 | 0.907 |
1-1-2/M82 | 1.15164 | 1 |
12-2/M82 | 1.4149 | 0.375 |
12-4/M82 | 1.13435 | 1 |
1-3/M82 | 1.42548 | 0.479 |
2-1-1/M82 | 1.43444 | 0.375 |
2-1/M82 | 1.59989 | 1 |
2-6/M82 | 2.11044 | 0.405 |
3-2/M82 | 0.9093 | 0.752 |
4-1-1/M82 | 1.24406 | 0.657 |
4-1/M82 | 0.75074 | |
4-3-2/M82 | 1.16281 | |
4-3/M82 | 1.17004 | 1 |
5-3/M82 | 0.53433 | 0.447 |
6-2/M82 | 2.10314 | 1 |
6-3/M82 | 0.95175 | 1 |
7-1/M82 | 0.64433 | 0.803 |
7-2/M82 | 1.6634 | 0.302 |
9-3-2/M82 | 1.57039 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.92568 | 1 |
IL2-6/WTpooled | 1.19011 | 0.659 |
IL7-5/WTpooled | 0.82473 | 1 |
IL7-3/WTpooled | 0.9593 | 1 |
IL12-4/WTpooled | 1.05817 | 0.891 |
IL1-4/WTpooled | 1.09125 | 1 |
WT/WTpooled | 1.03184 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09658 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03759 | 0.921 |
DC3000/delta hrp 6h | 0.97859 | 0.95 |
DC3000/delta hrp 12h | 0.87751 | 1 |
DC3000/delta hrp 24h | 0.95486 | 0.7 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11529 | |
DC3000 delta B/DC3000 delta AB | 1.17648 | 0.208 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.40996 | 0.254 |
Exp 36h | 1.15305 | 0.693 |
Exp 60h | 1.61489 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01731 | 1 |
Var 0h | 0.81089 | 0.933 |
Var 12h I row2-row1 | 0.85088 | 0.338 |
Var 12h NI row2-row1 | 1.08058 | 1 |
Var 36h I row2-row1 | 1.21249 | 0.298 |
Var 36h NI row2-row1 | 1.17135 | 0.482 |
Var 60h I row2-row1 | 0.8053 | 0.292 |
Var 60h NI row2-row1 | 0.98484 | 1 |
Time course 0hI-0hNI | 1.04077 | 0.852 |
Time course 12hI-12hNI | 0.95471 | 0.738 |
Time course 36hI-36hNI | 1.11221 | 0.355 |
Time course 60hI-60hNI | 0.6372 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90282 | 0.614 |
transgenic ySAMdc/azygous control (breaker) | 0.85194 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.01688 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.16527 | 0.042 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.71458 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.95779 | 1 |
Manapal/WT (break) | 0.79045 | 0.333 |
Manapal/WT (red) | 1.26201 | 0.164 |
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