Expression of 1-1-8.4.1.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.811930.278
27DAP/17DAP1.282740.686
39DAP/27DAP2.313360.047
41DAP/39DAP1.008571
42DAP/41DAP0.929991
43DAP/42DAP0.928910.874
47DAP/43DAP0.905860.68
52DAP/47DAP1.221810.707
57DAP/52DAP0.795740.509

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.266650.11
17DAP/reference0.782170.012
27DAP/reference0.979580.668
39DAP/reference0.836780.1
41DAP/reference0.796750.085
42DAP/reference1.430290.001
43DAP/reference1.022410.982
47DAP/reference0.923320.055
52DAP/reference0.963780.449
57DAP/reference1.164580.159

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.834610.057
27DAP/17DAP1.078390.951
39DAP/27DAP1.051320.548
41DAP/39DAP1.06460.861
42DAP/41DAP1.023521
43DAP/42DAP1.328080.016
47DAP/43DAP0.991340.961
52DAP/47DAP0.984440.925
57DAP/52DAP1.210230.357
57DAP/7DAP0.724431

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.497830.035
17DAP/reference1.284250.03
27DAP/reference1.22970.049
39DAP/reference1.074730.74
41DAP/reference1.682470.014
42DAP/reference1.769910.007
43DAP/reference2.862670.006
47DAP/reference1.848040.028
52DAP/reference2.647530.007
57DAP/reference2.032720.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.961850.607
17DAP/reference1.455660.027
27DAP/reference1.554260.026
39DAP/reference1.372760.016
41DAP/reference1.447150.014
42DAP/reference1.219880.015
43DAP/reference1.329990.104
47DAP/reference1.364660.023
52DAP/reference1.049520.747
57DAP/reference1.679610.017

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.259330.028
17DAP/reference0.902320.358
27DAP/reference1.500530.023
39DAP/reference1.258980.017
41DAP/reference1.194850.06
42DAP/reference1.354040.052
43DAP/reference1.483720.012
47DAP/reference1.307180.147
52DAP/reference1.293720.15
57DAP/reference1.240330.171

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.341661
26DAP/20DAP1.924880.176
34DAP/26DAP0.758860.093
51DAP/34DAP1.261380.073
52DAP/51DAP0.90641
53DAP/52DAP0.639820.049
55DAP/53DAP0.815810.021
57DAP/55DAP0.91280.601
62DAP/57DAP1.270930.034
68DAP/62DAP1.881320.206
68DAP/14DAP1.693610.074

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.161340.043

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.400460.017
Immature Eggplant/Mature Eggplant0.751710.134
Ripe Pepper/Ripe Tomato0.114180.224
Mature Eggplant/Ripe Tomato0.689810.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.867670.907
1-1-2/M821.151641
12-2/M821.41490.375
12-4/M821.134351
1-3/M821.425480.479
2-1-1/M821.434440.375
2-1/M821.599891
2-6/M822.110440.405
3-2/M820.90930.752
4-1-1/M821.244060.657
4-1/M820.75074
4-3-2/M821.16281
4-3/M821.170041
5-3/M820.534330.447
6-2/M822.103141
6-3/M820.951751
7-1/M820.644330.803
7-2/M821.66340.302
9-3-2/M821.57039

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.925681
IL2-6/WTpooled1.190110.659
IL7-5/WTpooled0.824731
IL7-3/WTpooled0.95931
IL12-4/WTpooled1.058170.891
IL1-4/WTpooled1.091251
WT/WTpooled1.031841

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.096581

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.037590.921
DC3000/delta hrp 6h0.978590.95
DC3000/delta hrp 12h0.877511
DC3000/delta hrp 24h0.954860.7

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.11529
DC3000 delta B/DC3000 delta AB1.176480.208

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.409960.254
Exp 36h1.153050.693
Exp 60h1.614890.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.017311
Var 0h0.810890.933
Var 12h I row2-row10.850880.338
Var 12h NI row2-row11.080581
Var 36h I row2-row11.212490.298
Var 36h NI row2-row11.171350.482
Var 60h I row2-row10.80530.292
Var 60h NI row2-row10.984841
Time course 0hI-0hNI1.040770.852
Time course 12hI-12hNI0.954710.738
Time course 36hI-36hNI1.112210.355
Time course 60hI-60hNI0.63720.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.902820.614
transgenic ySAMdc/azygous control (breaker)0.851940.15
transgenic ySAMdc/azygous control (red)1.016881

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.165270.042

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.714580.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.957791
Manapal/WT (break)0.790450.333
Manapal/WT (red)1.262010.164