Expression of 1-1-8.4.10.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.027630.977
27DAP/17DAP0.98321
39DAP/27DAP0.85770.335
41DAP/39DAP1.549770.363
42DAP/41DAP1.060.999
43DAP/42DAP0.847390.566
47DAP/43DAP1.029320.979
52DAP/47DAP1.20690.601
57DAP/52DAP0.928450.622

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.081480.23
17DAP/reference0.969570.448
27DAP/reference0.962630.369
39DAP/reference0.998540.991
41DAP/reference1.033750.312
42DAP/reference1.044160.093
43DAP/reference1.036040.596
47DAP/reference0.974450.322
52DAP/reference1.115440.205
57DAP/reference1.040340.511

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.999741
27DAP/17DAP1.01420.96
39DAP/27DAP1.031870.646
41DAP/39DAP0.99551
42DAP/41DAP1.044010.687
43DAP/42DAP0.979480.641
47DAP/43DAP1.038860.69
52DAP/47DAP0.960440.763
57DAP/52DAP1.007921
57DAP/7DAP0.968121

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.962060.326
17DAP/reference0.926660.013
27DAP/reference0.907340.015
39DAP/reference0.937580.025
41DAP/reference0.950260.103
42DAP/reference0.948840.037
43DAP/reference0.895930.012
47DAP/reference0.90530.168
52DAP/reference0.844260.031
57DAP/reference0.878190.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.04850.47
17DAP/reference1.125320.12
27DAP/reference1.111390.271
39DAP/reference1.152070.109
41DAP/reference1.075650.491
42DAP/reference1.06630.233
43DAP/reference1.12030.13
47DAP/reference1.075550.034
52DAP/reference1.131590.032
57DAP/reference1.107870.306

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.926720.077
17DAP/reference0.993410.763
27DAP/reference0.938710.089
39DAP/reference0.963470.36
41DAP/reference0.997140.826
42DAP/reference0.932340.134
43DAP/reference0.960660.294
47DAP/reference0.962170.335
52DAP/reference0.886210.223
57DAP/reference0.909380.069

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.001491
26DAP/20DAP0.979571
34DAP/26DAP0.966610.777
51DAP/34DAP0.982680.835
52DAP/51DAP1.01580.848
53DAP/52DAP0.962670.811
55DAP/53DAP1.026730.834
57DAP/55DAP1.22190.492
62DAP/57DAP0.919670.681
68DAP/62DAP1.053810.962
68DAP/14DAP0.905090.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.94310.358

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.55994
Mature Green Tomato/Ripe Tomato1.210340.209
Immature Eggplant/Mature Eggplant0.758350.329
Ripe Pepper/Ripe Tomato5.77435
Mature Eggplant/Ripe Tomato5.08608

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.985290.944
1-1-2/M820.993821
12-2/M821.028891
12-4/M820.988341
1-3/M820.993981
2-1-1/M820.98558
2-1/M821.69041
2-6/M820.979481
3-2/M821.002211
4-1-1/M820.951231
4-1/M820.986571
4-3-2/M820.958041
4-3/M821.021141
5-3/M821.048231
6-2/M821.003741
6-3/M821.085871
7-1/M821.040681
7-2/M821.008381
9-3-2/M820.929280.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.74321
IL2-6/WTpooled1.07740.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.316411
IL12-4/WTpooled0.727930.543
IL1-4/WTpooled1.104661
WT/WTpooled0.887341

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.823090.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.093830.921
DC3000/delta hrp 6h1.051841
DC3000/delta hrp 12h0.958281
DC3000/delta hrp 24h0.996761

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.968410.803
DC3000 delta B/DC3000 delta AB1.059040.484

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.841450.328
Exp 36h0.708940.456
Exp 60h0.744740.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.02271
Var 0h1.283520.339
Var 12h I row2-row11.051440.379
Var 12h NI row2-row10.954580.546
Var 36h I row2-row11.02541
Var 36h NI row2-row11.058961
Var 60h I row2-row11.334031
Var 60h NI row2-row11.098410.691
Time course 0hI-0hNI0.997471
Time course 12hI-12hNI0.982430.893
Time course 36hI-36hNI0.879480.033
Time course 60hI-60hNI0.692080.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.054780.221
transgenic ySAMdc/azygous control (breaker)1.938160.248
transgenic ySAMdc/azygous control (red)1.155581

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.965590.061

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.728610.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)6.138150.083
Manapal/WT (break)7.880470.13
Manapal/WT (red)12.21880.126