Expression of 1-1-8.4.10.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.47835 | 0.045 |
27DAP/17DAP | 1.48167 | 0.413 |
39DAP/27DAP | 0.96734 | 0.682 |
41DAP/39DAP | 0.65619 | 0.082 |
42DAP/41DAP | 0.74866 | 0.774 |
43DAP/42DAP | 0.78403 | 0.524 |
47DAP/43DAP | 0.80458 | 0.41 |
52DAP/47DAP | 1.17732 | 0.786 |
57DAP/52DAP | 0.91149 | 0.853 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85537 | 0.058 |
17DAP/reference | 1.13052 | 0.33 |
27DAP/reference | 1.17782 | 0.227 |
39DAP/reference | 1.29115 | 0.061 |
41DAP/reference | 1.36001 | 0.013 |
42DAP/reference | 1.01547 | 0.517 |
43DAP/reference | 0.98067 | 0.763 |
47DAP/reference | 0.95174 | 0.258 |
52DAP/reference | 0.90964 | 0.183 |
57DAP/reference | 1.03113 | 0.845 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08348 | 0.438 |
27DAP/17DAP | 0.87058 | 0.537 |
39DAP/27DAP | 1.06607 | 0.691 |
41DAP/39DAP | 0.85889 | 0.154 |
42DAP/41DAP | 0.95924 | 0.69 |
43DAP/42DAP | 0.62714 | 0.022 |
47DAP/43DAP | 1.02178 | 0.99 |
52DAP/47DAP | 1.0858 | 0.831 |
57DAP/52DAP | 0.86109 | 0.264 |
57DAP/7DAP | 0.91088 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84189 | 0.168 |
17DAP/reference | 0.86408 | 0.035 |
27DAP/reference | 1.0733 | 0.301 |
39DAP/reference | 0.89896 | 0.073 |
41DAP/reference | 1.04917 | 0.723 |
42DAP/reference | 0.97967 | 0.482 |
43DAP/reference | 0.80162 | 0.044 |
47DAP/reference | 0.894 | 0.079 |
52DAP/reference | 0.80415 | 0.021 |
57DAP/reference | 0.80979 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26254 | 0.254 |
17DAP/reference | 1.23891 | 0.081 |
27DAP/reference | 1.52983 | 0.09 |
39DAP/reference | 1.45943 | 0.042 |
41DAP/reference | 1.3833 | 0.099 |
42DAP/reference | 1.36375 | 0.021 |
43DAP/reference | 2.27865 | 0.01 |
47DAP/reference | 1.55578 | 0.009 |
52DAP/reference | 1.29721 | 0.124 |
57DAP/reference | 1.19753 | 0.2 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83593 | 0.112 |
17DAP/reference | 1.11545 | 0.398 |
27DAP/reference | 0.9994 | 0.843 |
39DAP/reference | 1.0555 | 0.633 |
41DAP/reference | 1.16767 | 0.502 |
42DAP/reference | 1.05554 | 0.716 |
43DAP/reference | 0.84953 | 0.106 |
47DAP/reference | 1.00532 | 0.708 |
52DAP/reference | 0.8247 | 0.15 |
57DAP/reference | 1.23727 | 0.214 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.11081 | 0.966 |
26DAP/20DAP | 1.38642 | 0.683 |
34DAP/26DAP | 0.88865 | 0.803 |
51DAP/34DAP | 4.42341 | 0.032 |
52DAP/51DAP | 1.14336 | 0.225 |
53DAP/52DAP | 2.79668 | 0.02 |
55DAP/53DAP | 1.57382 | 0.039 |
57DAP/55DAP | 0.56725 | 0.03 |
62DAP/57DAP | 0.38077 | 0.002 |
68DAP/62DAP | 1.12803 | 0.926 |
68DAP/14DAP | 1.73782 | 0.049 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.2194 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.14348 | 0.051 |
Mature Green Tomato/Ripe Tomato | 10.4097 | 0.025 |
Immature Eggplant/Mature Eggplant | 1.76803 | 0.05 |
Ripe Pepper/Ripe Tomato | 17.8968 | 0.244 |
Mature Eggplant/Ripe Tomato | 4.54602 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.21673 | 0.877 |
1-1-2/M82 | 1.08479 | 1 |
12-2/M82 | 1.56626 | 0.448 |
12-4/M82 | 0.78868 | 1 |
1-3/M82 | 0.99797 | 1 |
2-1-1/M82 | 0.76464 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.89211 | 1 |
3-2/M82 | 0.85332 | 1 |
4-1-1/M82 | 0.89827 | 1 |
4-1/M82 | 1.90573 | |
4-3-2/M82 | 0.72041 | 0.698 |
4-3/M82 | 0.76612 | 0.611 |
5-3/M82 | 1.02816 | 1 |
6-2/M82 | 0.66168 | 1 |
6-3/M82 | 1.0341 | 1 |
7-1/M82 | 1.04802 | 1 |
7-2/M82 | 0.94262 | 1 |
9-3-2/M82 | 0.76525 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.89261 | 1 |
IL2-6/WTpooled | 1.32793 | 0.46 |
IL7-5/WTpooled | 1.19101 | 1 |
IL7-3/WTpooled | 0.94054 | 0.418 |
IL12-4/WTpooled | 0.87969 | 0.71 |
IL1-4/WTpooled | 1.06742 | 1 |
WT/WTpooled | 0.94157 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14152 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08368 | 0.875 |
DC3000/delta hrp 6h | 1.05922 | 1 |
DC3000/delta hrp 12h | 0.95157 | 1 |
DC3000/delta hrp 24h | 0.88453 | 0.166 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.94382 | 0.724 |
DC3000 delta B/DC3000 delta AB | 1.2782 | 0.212 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07973 | 1 |
Exp 36h | 0.99792 | 1 |
Exp 60h | 1.26476 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04683 | 1 |
Var 0h | 1.0531 | 1 |
Var 12h I row2-row1 | 0.9303 | 0.565 |
Var 12h NI row2-row1 | 1.06481 | 0.649 |
Var 36h I row2-row1 | 0.92622 | 1 |
Var 36h NI row2-row1 | 0.99903 | 1 |
Var 60h I row2-row1 | 0.78091 | 0.306 |
Var 60h NI row2-row1 | 0.98564 | 1 |
Time course 0hI-0hNI | 1.02896 | 0.852 |
Time course 12hI-12hNI | 0.99736 | 1 |
Time course 36hI-36hNI | 1.08542 | 0.147 |
Time course 60hI-60hNI | 1.22623 | 0.069 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03851 | 0.397 |
transgenic ySAMdc/azygous control (breaker) | 0.71745 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.0271 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.07777 | 0.1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.43289 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83672 | 0.172 |
Manapal/WT (break) | 0.83254 | 1 |
Manapal/WT (red) | 1.48501 | 0.413 |
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