Expression of 1-1-8.4.10.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.36702 | 0.014 |
27DAP/17DAP | 0.46448 | 0.04 |
39DAP/27DAP | 0.83738 | 0.549 |
41DAP/39DAP | 0.57345 | 0.063 |
42DAP/41DAP | 0.81158 | 1 |
43DAP/42DAP | 1.28005 | 0.772 |
47DAP/43DAP | 0.7808 | 0.35 |
52DAP/47DAP | 1.32706 | 0.665 |
57DAP/52DAP | 1.05518 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.56016 | 0.007 |
17DAP/reference | 1.61825 | 0.017 |
27DAP/reference | 2.0583 | 0.023 |
39DAP/reference | 0.59167 | 0.019 |
41DAP/reference | 0.53886 | 0.008 |
42DAP/reference | 0.58803 | 0.001 |
43DAP/reference | 0.39175 | 0.013 |
47DAP/reference | 0.41928 | 0.001 |
52DAP/reference | 0.38788 | 0.015 |
57DAP/reference | 0.50805 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.24616 | 0.019 |
27DAP/17DAP | 1.34954 | 0.04 |
39DAP/27DAP | 0.55605 | 0.029 |
41DAP/39DAP | 0.51401 | 0.026 |
42DAP/41DAP | 1.05442 | 1 |
43DAP/42DAP | 1.09937 | 0.746 |
47DAP/43DAP | 1.77657 | 0.848 |
52DAP/47DAP | 1.22439 | 0.779 |
57DAP/52DAP | 1.03352 | 0.929 |
57DAP/7DAP | 0.29222 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.63389 | 0.029 |
17DAP/reference | 5.0322 | 0.006 |
27DAP/reference | 6.08799 | 0.006 |
39DAP/reference | 6.84887 | 0.005 |
41DAP/reference | 6.4589 | 0.017 |
42DAP/reference | 9.44347 | 0.006 |
43DAP/reference | 10.7887 | 0.006 |
47DAP/reference | 3.76808 | 0.885 |
52DAP/reference | 8.48256 | 0.007 |
57DAP/reference | 5.42228 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.78999 | 0.035 |
17DAP/reference | 1.8655 | 0.007 |
27DAP/reference | 1.00579 | 0.619 |
39DAP/reference | 0.4254 | 0.008 |
41DAP/reference | 0.56269 | 0.012 |
42DAP/reference | 0.85997 | 0.212 |
43DAP/reference | 0.62272 | 0.016 |
47DAP/reference | 0.43433 | 0.01 |
52DAP/reference | 0.47711 | 0.004 |
57DAP/reference | 0.51219 | 0.004 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.8917 | 0.016 |
17DAP/reference | 2.49596 | 0.179 |
27DAP/reference | 5.09049 | 0.016 |
39DAP/reference | 5.31714 | 0.019 |
41DAP/reference | 4.5768 | 0.012 |
42DAP/reference | 4.21662 | 0.171 |
43DAP/reference | 3.78538 | 0.264 |
47DAP/reference | 0.40515 | 0.006 |
52DAP/reference | 4.45166 | 0.369 |
57DAP/reference | 2.29106 | 0.661 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12628 | 1 |
26DAP/20DAP | 1.35131 | 0.187 |
34DAP/26DAP | 0.967 | 0.92 |
51DAP/34DAP | 0.66075 | 0.069 |
52DAP/51DAP | 0.74038 | 0.079 |
53DAP/52DAP | 0.8029 | 0.173 |
55DAP/53DAP | 0.62406 | 0.016 |
57DAP/55DAP | 0.70036 | 0.08 |
62DAP/57DAP | 0.89567 | 0.681 |
68DAP/62DAP | 1.44765 | 0.124 |
68DAP/14DAP | 1.34126 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.10981 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.98842 | 0.058 |
Mature Green Tomato/Ripe Tomato | 18.7757 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.4303 | 0.057 |
Ripe Pepper/Ripe Tomato | 138.624 | 0.256 |
Mature Eggplant/Ripe Tomato | 596.528 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.00106 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.67179 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.72967 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88869 | |
IL2-6/WTpooled | 1.09548 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.92315 | 1 |
IL12-4/WTpooled | 0.66991 | 0.543 |
IL1-4/WTpooled | 1.30419 | 1 |
WT/WTpooled | 0.91461 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17454 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96998 | 0.734 |
DC3000/delta hrp 6h | 0.84951 | 0.95 |
DC3000/delta hrp 12h | 0.65737 | 1 |
DC3000/delta hrp 24h | 0.65126 | 0.114 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.49849 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.51984 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.91772 | 1 |
Exp 36h | 0.59686 | 0.406 |
Exp 60h | 0.58696 | 0.251 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99378 | 1 |
Var 0h | 0.97762 | 1 |
Var 12h I row2-row1 | 0.77861 | 0.338 |
Var 12h NI row2-row1 | 0.86619 | 0.494 |
Var 36h I row2-row1 | 1.01914 | 1 |
Var 36h NI row2-row1 | 1.19964 | 1 |
Var 60h I row2-row1 | 1.51614 | 0.562 |
Var 60h NI row2-row1 | 1.06451 | 0.904 |
Time course 0hI-0hNI | 0.98757 | 0.979 |
Time course 12hI-12hNI | 0.89604 | 0.347 |
Time course 36hI-36hNI | 0.72664 | 0.023 |
Time course 60hI-60hNI | 0.09024 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.70395 | 0.32 |
transgenic ySAMdc/azygous control (breaker) | 1.01987 | 1 |
transgenic ySAMdc/azygous control (red) | 1.27736 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.7181 | 0.073 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 4.13349 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.25331 | 0.307 |
Manapal/WT (break) | 1.7081 | 1 |
Manapal/WT (red) | 1.06341 | 1 |
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