Expression of 1-1-8.4.10.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.367020.014
27DAP/17DAP0.464480.04
39DAP/27DAP0.837380.549
41DAP/39DAP0.573450.063
42DAP/41DAP0.811581
43DAP/42DAP1.280050.772
47DAP/43DAP0.78080.35
52DAP/47DAP1.327060.665
57DAP/52DAP1.055180.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.560160.007
17DAP/reference1.618250.017
27DAP/reference2.05830.023
39DAP/reference0.591670.019
41DAP/reference0.538860.008
42DAP/reference0.588030.001
43DAP/reference0.391750.013
47DAP/reference0.419280.001
52DAP/reference0.387880.015
57DAP/reference0.508050.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.246160.019
27DAP/17DAP1.349540.04
39DAP/27DAP0.556050.029
41DAP/39DAP0.514010.026
42DAP/41DAP1.054421
43DAP/42DAP1.099370.746
47DAP/43DAP1.776570.848
52DAP/47DAP1.224390.779
57DAP/52DAP1.033520.929
57DAP/7DAP0.292221

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.633890.029
17DAP/reference5.03220.006
27DAP/reference6.087990.006
39DAP/reference6.848870.005
41DAP/reference6.45890.017
42DAP/reference9.443470.006
43DAP/reference10.78870.006
47DAP/reference3.768080.885
52DAP/reference8.482560.007
57DAP/reference5.422280.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.789990.035
17DAP/reference1.86550.007
27DAP/reference1.005790.619
39DAP/reference0.42540.008
41DAP/reference0.562690.012
42DAP/reference0.859970.212
43DAP/reference0.622720.016
47DAP/reference0.434330.01
52DAP/reference0.477110.004
57DAP/reference0.512190.004

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.89170.016
17DAP/reference2.495960.179
27DAP/reference5.090490.016
39DAP/reference5.317140.019
41DAP/reference4.57680.012
42DAP/reference4.216620.171
43DAP/reference3.785380.264
47DAP/reference0.405150.006
52DAP/reference4.451660.369
57DAP/reference2.291060.661

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.126281
26DAP/20DAP1.351310.187
34DAP/26DAP0.9670.92
51DAP/34DAP0.660750.069
52DAP/51DAP0.740380.079
53DAP/52DAP0.80290.173
55DAP/53DAP0.624060.016
57DAP/55DAP0.700360.08
62DAP/57DAP0.895670.681
68DAP/62DAP1.447650.124
68DAP/14DAP1.341261

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.109810.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.988420.058
Mature Green Tomato/Ripe Tomato18.77570.015
Immature Eggplant/Mature Eggplant0.43030.057
Ripe Pepper/Ripe Tomato138.6240.256
Mature Eggplant/Ripe Tomato596.5280.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.00106
12-2/M82N/AN/A
12-4/M820.67179
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.72967
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.88869
IL2-6/WTpooled1.095481
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.923151
IL12-4/WTpooled0.669910.543
IL1-4/WTpooled1.304191
WT/WTpooled0.914611

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.174541

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.969980.734
DC3000/delta hrp 6h0.849510.95
DC3000/delta hrp 12h0.657371
DC3000/delta hrp 24h0.651260.114

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.498490.023
DC3000 delta B/DC3000 delta AB0.519840.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.917721
Exp 36h0.596860.406
Exp 60h0.586960.251

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.993781
Var 0h0.977621
Var 12h I row2-row10.778610.338
Var 12h NI row2-row10.866190.494
Var 36h I row2-row11.019141
Var 36h NI row2-row11.199641
Var 60h I row2-row11.516140.562
Var 60h NI row2-row11.064510.904
Time course 0hI-0hNI0.987570.979
Time course 12hI-12hNI0.896040.347
Time course 36hI-36hNI0.726640.023
Time course 60hI-60hNI0.090240.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.703950.32
transgenic ySAMdc/azygous control (breaker)1.019871
transgenic ySAMdc/azygous control (red)1.277360.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.71810.073

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt4.133490.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.253310.307
Manapal/WT (break)1.70811
Manapal/WT (red)1.063411