Expression of 1-1-8.4.10.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.963070.728
27DAP/17DAP0.795960.424
39DAP/27DAP0.975810.733
41DAP/39DAP0.805180.311
42DAP/41DAP0.867981
43DAP/42DAP1.092131
47DAP/43DAP0.967630.847
52DAP/47DAP0.927340.774
57DAP/52DAP0.995820.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.139770.303
17DAP/reference1.097360.122
27DAP/reference1.05150.587
39DAP/reference1.174650.214
41DAP/reference1.221420.145
42DAP/reference0.932390.218
43DAP/reference1.07880.403
47DAP/reference0.981570.445
52DAP/reference0.888860.128
57DAP/reference0.903570.106

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.940550.56
27DAP/17DAP0.970.878
39DAP/27DAP0.592680.028
41DAP/39DAP1.158070.266
42DAP/41DAP0.736620.013
43DAP/42DAP0.849220.082
47DAP/43DAP0.977320.886
52DAP/47DAP1.088850.816
57DAP/52DAP0.929040.628
57DAP/7DAP0.730081

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.281920.074
17DAP/reference1.181640.01
27DAP/reference1.285880.018
39DAP/reference1.142630.157
41DAP/reference0.996610.741
42DAP/reference1.006841
43DAP/reference0.997760.665
47DAP/reference1.159580.21
52DAP/reference1.196150.286
57DAP/reference1.046020.698

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.149280.501
17DAP/reference1.204730.156
27DAP/reference1.187630.212
39DAP/reference1.079560.868
41DAP/reference0.988190.545
42DAP/reference1.040260.951
43DAP/reference1.08750.331
47DAP/reference0.989910.59
52DAP/reference0.952160.351
57DAP/reference1.103240.737

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.307220.041
17DAP/reference1.060810.706
27DAP/reference1.145760.054
39DAP/reference1.223250.014
41DAP/reference1.036680.674
42DAP/reference0.989940.816
43DAP/reference0.875280.137
47DAP/reference1.023270.994
52DAP/reference0.98860.781
57DAP/reference0.890380.177

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.927991
26DAP/20DAP1.04791
34DAP/26DAP0.904610.777
51DAP/34DAP1.133810.535
52DAP/51DAP0.811250.151
53DAP/52DAP1.296240.048
55DAP/53DAP0.707910.144
57DAP/55DAP1.170450.865
62DAP/57DAP1.080020.833
68DAP/62DAP0.820620.429
68DAP/14DAP0.707370.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.164850.326

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.419310.096
Mature Green Tomato/Ripe Tomato2.632010.016
Immature Eggplant/Mature Eggplant0.786070.111
Ripe Pepper/Ripe Tomato3.765771
Mature Eggplant/Ripe Tomato1.926170.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.936350.944
1-1-2/M820.94291
12-2/M820.769860.74
12-4/M821.062651
1-3/M820.758760.378
2-1-1/M820.737730.465
2-1/M820.956680.519
2-6/M821.071980.594
3-2/M820.762780.752
4-1-1/M820.955431
4-1/M821.0172
4-3-2/M821.047061
4-3/M820.717620.475
5-3/M821.385970.496
6-2/M820.758611
6-3/M821.171571
7-1/M821.064380.992
7-2/M821.030331
9-3-2/M821.046611

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.298280.365
IL2-6/WTpooled2.297750.456
IL7-5/WTpooled1.124791
IL7-3/WTpooled0.795610.418
IL12-4/WTpooled0.742340.71
IL1-4/WTpooled1.080861
WT/WTpooled1.09011

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.717820.226

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.132040.774
DC3000/delta hrp 6h1.361660.857
DC3000/delta hrp 12h1.107221
DC3000/delta hrp 24h0.756750.044

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.456440.023
DC3000 delta B/DC3000 delta AB0.410380.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.252040.228
Exp 36h1.184851
Exp 60h1.325990.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.997031
Var 0h1.045550.936
Var 12h I row2-row10.749730.344
Var 12h NI row2-row11.128531
Var 36h I row2-row10.683820.805
Var 36h NI row2-row10.944540.706
Var 60h I row2-row11.183040.543
Var 60h NI row2-row10.967121
Time course 0hI-0hNI1.048730.852
Time course 12hI-12hNI0.953430.637
Time course 36hI-36hNI0.934540.236
Time course 60hI-60hNI0.364190.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.00021
transgenic ySAMdc/azygous control (breaker)1.012351
transgenic ySAMdc/azygous control (red)0.98311

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.113180.055

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.773370.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.133010.14
Manapal/WT (break)1.229911
Manapal/WT (red)1.182640.222