Expression of 1-1-8.4.10.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.886190.464
27DAP/17DAP1.100070.854
39DAP/27DAP1.58270.065
41DAP/39DAP0.868240.47
42DAP/41DAP1.353210.751
43DAP/42DAP1.590680.772
47DAP/43DAP0.454010.049
52DAP/47DAP0.984410.88
57DAP/52DAP1.702470.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.344560.218
17DAP/reference1.377020.369
27DAP/reference0.937090.497
39DAP/reference1.59410.534
41DAP/reference1.331260.338
42DAP/reference4.716370.001
43DAP/reference3.156480.006
47DAP/reference2.084320.001
52DAP/reference1.176180.548
57DAP/reference1.837380.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.837610.176
27DAP/17DAP1.081360.909
39DAP/27DAP0.92370.616
41DAP/39DAP1.289530.88
42DAP/41DAP1.32990.526
43DAP/42DAP1.068730.513
47DAP/43DAP1.019840.951
52DAP/47DAP0.846330.512
57DAP/52DAP0.907660.331
57DAP/7DAP1.175011

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.108160.235
17DAP/reference1.213760.054
27DAP/reference1.077730.301
39DAP/reference1.065920.314
41DAP/reference1.149620.066
42DAP/reference1.116140.076
43DAP/reference1.141750.105
47DAP/reference4.194730.024
52DAP/reference1.053330.428
57DAP/reference1.135390.198

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.892630.353
17DAP/reference2.040140.011
27DAP/reference1.808880.015
39DAP/reference1.349460.207
41DAP/reference1.402330.02
42DAP/reference2.309520.007
43DAP/reference1.361790.761
47DAP/reference2.059470.008
52DAP/reference1.023661
57DAP/reference1.199421

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.169080.158
17DAP/reference1.208080.321
27DAP/reference1.099850.062
39DAP/reference1.23450.12
41DAP/reference1.16830.174
42DAP/reference1.921380.121
43DAP/reference1.682280.116
47DAP/reference1.562640.085
52DAP/reference1.253470.301
57DAP/reference2.896790.011

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.076360.966
26DAP/20DAP3.704570.119
34DAP/26DAP0.823190.561
51DAP/34DAP1.256690.261
52DAP/51DAP1.017370.965
53DAP/52DAP0.581270.049
55DAP/53DAP0.350740.018
57DAP/55DAP0.928760.647
62DAP/57DAP1.237790.393
68DAP/62DAP1.160250.984
68DAP/14DAP0.715330.086

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker6.384890.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.559820.058
Mature Green Tomato/Ripe Tomato1.00180.898
Immature Eggplant/Mature Eggplant0.632030.077
Ripe Pepper/Ripe Tomato0.672130.293
Mature Eggplant/Ripe Tomato0.743521

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.844740.605
1-1-2/M822.26511
12-2/M821.045381
12-4/M822.180741
1-3/M822.571840.479
2-1-1/M820.88410.784
2-1/M820.666020.325
2-6/M821.193160.505
3-2/M821.150580.84
4-1-1/M821.506911
4-1/M823.458710.853
4-3-2/M822.052390.284
4-3/M821.069541
5-3/M820.97591
6-2/M821.761441
6-3/M821.098731
7-1/M821.061720.598
7-2/M821.878690.385
9-3-2/M822.603171

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.85430.321
IL2-6/WTpooled1.023291
IL7-5/WTpooled0.608261
IL7-3/WTpooled1.045451
IL12-4/WTpooled1.052410.595
IL1-4/WTpooled0.736910.562
WT/WTpooled1.109410.874

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.179891

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.999131
DC3000/delta hrp 6h1.07550.95
DC3000/delta hrp 12h1.368361
DC3000/delta hrp 24h0.642420.037

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.791940.052
DC3000 delta B/DC3000 delta AB0.737050.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.829781
Exp 36h1.710611
Exp 60h1.101731

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.106331
Var 0h1.212410.936
Var 12h I row2-row11.071551
Var 12h NI row2-row11.378790.649
Var 36h I row2-row10.881161
Var 36h NI row2-row11.139471
Var 60h I row2-row10.862520.293
Var 60h NI row2-row10.998761
Time course 0hI-0hNI1.284390.323
Time course 12hI-12hNI0.912160.39
Time course 36hI-36hNI0.723110.023
Time course 60hI-60hNI1.158061

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.094780.748
transgenic ySAMdc/azygous control (breaker)0.5540.142
transgenic ySAMdc/azygous control (red)0.939681

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.191880.086

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.558550.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.091590.14
Manapal/WT (break)1.030221
Manapal/WT (red)0.996911