Expression of 1-1-8.4.11.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.430610.394
27DAP/17DAP1.679630.362
39DAP/27DAP2.83340.029
41DAP/39DAP1.900160.181
42DAP/41DAP2.577860.024
43DAP/42DAP1.551480.772
47DAP/43DAP0.952770.825
52DAP/47DAP0.527790.039
57DAP/52DAP1.175080.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.359230.024
17DAP/reference0.637580.012
27DAP/reference0.698570.019
39DAP/reference1.317770.679
41DAP/reference1.047951
42DAP/reference3.42120.001
43DAP/reference3.585840.004
47DAP/reference2.622220.001
52DAP/reference1.280580.102
57DAP/reference2.191690.03

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.574280.048
27DAP/17DAP1.009381
39DAP/27DAP12.47590.016
41DAP/39DAP0.207560.013
42DAP/41DAP4.639010.002
43DAP/42DAP5.264350.013
47DAP/43DAP0.844360.286
52DAP/47DAP1.02510.925
57DAP/52DAP1.302480.213
57DAP/7DAP20.20190.22

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.226450.039
17DAP/reference0.255520.011
27DAP/reference0.217150.007
39DAP/reference0.820180.126
41DAP/reference0.538050.03
42DAP/reference1.223041
43DAP/reference2.0990.009
47DAP/reference3.071380.015
52DAP/reference0.800420.097
57DAP/reference0.784060.032

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.296520.004
17DAP/reference0.304790.003
27DAP/reference0.381590.007
39DAP/reference0.362120.007
41DAP/reference0.421350.014
42DAP/reference0.593440.035
43DAP/reference0.411610.003
47DAP/reference0.845190.149
52DAP/reference0.299330.003
57DAP/reference0.383150.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.239820.028
17DAP/reference0.80.141
27DAP/reference0.262090.022
39DAP/reference0.420340.008
41DAP/reference0.556120.018
42DAP/reference4.48570.006
43DAP/reference4.660860.006
47DAP/reference3.349040.005
52DAP/reference4.173960.027
57DAP/reference1.221350.274

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.880490.961
26DAP/20DAP0.733880.317
34DAP/26DAP1.227510.304
51DAP/34DAP1.252850.759
52DAP/51DAP1.160680.588
53DAP/52DAP0.950460.848
55DAP/53DAP0.999270.886
57DAP/55DAP1.026940.955
62DAP/57DAP1.119610.935
68DAP/62DAP0.76270.177
68DAP/14DAP0.732780.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker30.41980.043

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.168940.029
Immature Eggplant/Mature Eggplant9.672460.056
Ripe Pepper/Ripe Tomato0.050570.224
Mature Eggplant/Ripe Tomato0.037810.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.124580.877
1-1-2/M821.11661
12-2/M820.925850.862
12-4/M821.10271
1-3/M821.911580.248
2-1-1/M820.809060.465
2-1/M820.897570.74
2-6/M820.983871
3-2/M821.021381
4-1-1/M820.842611
4-1/M821.182671
4-3-2/M820.961151
4-3/M820.931950.72
5-3/M820.989551
6-2/M820.984511
6-3/M820.996921
7-1/M820.951291
7-2/M821.017311
9-3-2/M820.862751

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.037111
IL2-6/WTpooled1.590020.584
IL7-5/WTpooled1.696180.792
IL7-3/WTpooled0.561550.298
IL12-4/WTpooled0.842241
IL1-4/WTpooled1.066241
WT/WTpooled1.010710.686

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.397410.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.009181
DC3000/delta hrp 6h0.83987
DC3000/delta hrp 12h1.075151
DC3000/delta hrp 24h0.544880.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.948040.879
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.080421
Var 0h1.030241
Var 12h I row2-row18.734830.58
Var 12h NI row2-row11.741781
Var 36h I row2-row11.055061
Var 36h NI row2-row10.509751
Var 60h I row2-row11.084411
Var 60h NI row2-row11.031261
Time course 0hI-0hNI1.050150.799
Time course 12hI-12hNI0.930340.698
Time course 36hI-36hNI0.947080.45
Time course 60hI-60hNI2.498650.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.442770.246
transgenic ySAMdc/azygous control (breaker)1.140760.178
transgenic ySAMdc/azygous control (red)0.967611

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.458460.018

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.304830.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.608750.14
Manapal/WT (break)1.01821
Manapal/WT (red)0.917160.607