Expression of 1-1-8.4.11.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.43061 | 0.394 |
27DAP/17DAP | 1.67963 | 0.362 |
39DAP/27DAP | 2.8334 | 0.029 |
41DAP/39DAP | 1.90016 | 0.181 |
42DAP/41DAP | 2.57786 | 0.024 |
43DAP/42DAP | 1.55148 | 0.772 |
47DAP/43DAP | 0.95277 | 0.825 |
52DAP/47DAP | 0.52779 | 0.039 |
57DAP/52DAP | 1.17508 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.35923 | 0.024 |
17DAP/reference | 0.63758 | 0.012 |
27DAP/reference | 0.69857 | 0.019 |
39DAP/reference | 1.31777 | 0.679 |
41DAP/reference | 1.04795 | 1 |
42DAP/reference | 3.4212 | 0.001 |
43DAP/reference | 3.58584 | 0.004 |
47DAP/reference | 2.62222 | 0.001 |
52DAP/reference | 1.28058 | 0.102 |
57DAP/reference | 2.19169 | 0.03 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.57428 | 0.048 |
27DAP/17DAP | 1.00938 | 1 |
39DAP/27DAP | 12.4759 | 0.016 |
41DAP/39DAP | 0.20756 | 0.013 |
42DAP/41DAP | 4.63901 | 0.002 |
43DAP/42DAP | 5.26435 | 0.013 |
47DAP/43DAP | 0.84436 | 0.286 |
52DAP/47DAP | 1.0251 | 0.925 |
57DAP/52DAP | 1.30248 | 0.213 |
57DAP/7DAP | 20.2019 | 0.22 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.22645 | 0.039 |
17DAP/reference | 0.25552 | 0.011 |
27DAP/reference | 0.21715 | 0.007 |
39DAP/reference | 0.82018 | 0.126 |
41DAP/reference | 0.53805 | 0.03 |
42DAP/reference | 1.22304 | 1 |
43DAP/reference | 2.099 | 0.009 |
47DAP/reference | 3.07138 | 0.015 |
52DAP/reference | 0.80042 | 0.097 |
57DAP/reference | 0.78406 | 0.032 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.29652 | 0.004 |
17DAP/reference | 0.30479 | 0.003 |
27DAP/reference | 0.38159 | 0.007 |
39DAP/reference | 0.36212 | 0.007 |
41DAP/reference | 0.42135 | 0.014 |
42DAP/reference | 0.59344 | 0.035 |
43DAP/reference | 0.41161 | 0.003 |
47DAP/reference | 0.84519 | 0.149 |
52DAP/reference | 0.29933 | 0.003 |
57DAP/reference | 0.38315 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.23982 | 0.028 |
17DAP/reference | 0.8 | 0.141 |
27DAP/reference | 0.26209 | 0.022 |
39DAP/reference | 0.42034 | 0.008 |
41DAP/reference | 0.55612 | 0.018 |
42DAP/reference | 4.4857 | 0.006 |
43DAP/reference | 4.66086 | 0.006 |
47DAP/reference | 3.34904 | 0.005 |
52DAP/reference | 4.17396 | 0.027 |
57DAP/reference | 1.22135 | 0.274 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.88049 | 0.961 |
26DAP/20DAP | 0.73388 | 0.317 |
34DAP/26DAP | 1.22751 | 0.304 |
51DAP/34DAP | 1.25285 | 0.759 |
52DAP/51DAP | 1.16068 | 0.588 |
53DAP/52DAP | 0.95046 | 0.848 |
55DAP/53DAP | 0.99927 | 0.886 |
57DAP/55DAP | 1.02694 | 0.955 |
62DAP/57DAP | 1.11961 | 0.935 |
68DAP/62DAP | 0.7627 | 0.177 |
68DAP/14DAP | 0.73278 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 30.4198 | 0.043 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.16894 | 0.029 |
Immature Eggplant/Mature Eggplant | 9.67246 | 0.056 |
Ripe Pepper/Ripe Tomato | 0.05057 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.03781 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.12458 | 0.877 |
1-1-2/M82 | 1.1166 | 1 |
12-2/M82 | 0.92585 | 0.862 |
12-4/M82 | 1.1027 | 1 |
1-3/M82 | 1.91158 | 0.248 |
2-1-1/M82 | 0.80906 | 0.465 |
2-1/M82 | 0.89757 | 0.74 |
2-6/M82 | 0.98387 | 1 |
3-2/M82 | 1.02138 | 1 |
4-1-1/M82 | 0.84261 | 1 |
4-1/M82 | 1.18267 | 1 |
4-3-2/M82 | 0.96115 | 1 |
4-3/M82 | 0.93195 | 0.72 |
5-3/M82 | 0.98955 | 1 |
6-2/M82 | 0.98451 | 1 |
6-3/M82 | 0.99692 | 1 |
7-1/M82 | 0.95129 | 1 |
7-2/M82 | 1.01731 | 1 |
9-3-2/M82 | 0.86275 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.03711 | 1 |
IL2-6/WTpooled | 1.59002 | 0.584 |
IL7-5/WTpooled | 1.69618 | 0.792 |
IL7-3/WTpooled | 0.56155 | 0.298 |
IL12-4/WTpooled | 0.84224 | 1 |
IL1-4/WTpooled | 1.06624 | 1 |
WT/WTpooled | 1.01071 | 0.686 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.39741 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00918 | 1 |
DC3000/delta hrp 6h | 0.83987 | |
DC3000/delta hrp 12h | 1.07515 | 1 |
DC3000/delta hrp 24h | 0.54488 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.94804 | 0.879 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.08042 | 1 |
Var 0h | 1.03024 | 1 |
Var 12h I row2-row1 | 8.73483 | 0.58 |
Var 12h NI row2-row1 | 1.74178 | 1 |
Var 36h I row2-row1 | 1.05506 | 1 |
Var 36h NI row2-row1 | 0.50975 | 1 |
Var 60h I row2-row1 | 1.08441 | 1 |
Var 60h NI row2-row1 | 1.03126 | 1 |
Time course 0hI-0hNI | 1.05015 | 0.799 |
Time course 12hI-12hNI | 0.93034 | 0.698 |
Time course 36hI-36hNI | 0.94708 | 0.45 |
Time course 60hI-60hNI | 2.49865 | 0.019 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.44277 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.14076 | 0.178 |
transgenic ySAMdc/azygous control (red) | 0.96761 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.45846 | 0.018 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.30483 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.60875 | 0.14 |
Manapal/WT (break) | 1.0182 | 1 |
Manapal/WT (red) | 0.91716 | 0.607 |
|
|