Expression of 1-1-8.4.11.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09636 | 0.911 |
27DAP/17DAP | 1.24755 | 0.755 |
39DAP/27DAP | 1.34339 | 0.219 |
41DAP/39DAP | 0.90771 | 0.611 |
42DAP/41DAP | 1.15064 | 0.751 |
43DAP/42DAP | 1.05818 | 1 |
47DAP/43DAP | 1.3484 | 0.355 |
52DAP/47DAP | 1.05327 | 0.937 |
57DAP/52DAP | 1.21446 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93479 | 0.284 |
17DAP/reference | 1.14662 | 0.061 |
27DAP/reference | 1.1845 | 0.103 |
39DAP/reference | 1.26655 | 0.018 |
41DAP/reference | 1.10036 | 0.516 |
42DAP/reference | 1.13891 | 0.166 |
43DAP/reference | 1.31239 | 0.012 |
47DAP/reference | 1.66582 | 0.001 |
52DAP/reference | 1.41402 | 0.01 |
57DAP/reference | 1.19123 | 0.122 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10189 | 0.961 |
27DAP/17DAP | 1.17935 | 0.5 |
39DAP/27DAP | 1.15127 | 0.429 |
41DAP/39DAP | 0.91797 | 0.747 |
42DAP/41DAP | 1.47498 | 0.401 |
43DAP/42DAP | 0.99636 | 0.991 |
47DAP/43DAP | 1.01507 | 0.941 |
52DAP/47DAP | 1.07518 | 0.819 |
57DAP/52DAP | 0.97713 | 0.776 |
57DAP/7DAP | 0.98877 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12188 | 0.173 |
17DAP/reference | 1.32294 | 0.022 |
27DAP/reference | 1.28459 | 0.01 |
39DAP/reference | 1.37703 | 0.007 |
41DAP/reference | 1.0877 | 0.475 |
42DAP/reference | 1.16148 | 0.037 |
43DAP/reference | 1.32256 | 0.02 |
47DAP/reference | 1.38662 | 0.039 |
52DAP/reference | 1.18577 | 0.247 |
57DAP/reference | 1.22488 | 0.037 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85771 | 0.129 |
17DAP/reference | 1.04721 | 0.756 |
27DAP/reference | 1.05533 | 0.735 |
39DAP/reference | 0.99814 | 0.661 |
41DAP/reference | 0.94491 | 0.357 |
42DAP/reference | 0.94003 | 0.212 |
43DAP/reference | 0.87332 | 0.077 |
47DAP/reference | 1.03564 | 0.658 |
52DAP/reference | 0.83408 | 0.023 |
57DAP/reference | 0.92842 | 0.298 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94548 | 0.362 |
17DAP/reference | 0.89501 | 0.262 |
27DAP/reference | 1.14264 | 0.227 |
39DAP/reference | 1.21959 | 0.016 |
41DAP/reference | 1.07743 | 0.411 |
42DAP/reference | 1.38803 | 0.08 |
43DAP/reference | 1.31329 | 0.022 |
47DAP/reference | 1.35919 | 0.006 |
52DAP/reference | 2.0226 | 0.029 |
57DAP/reference | 1.45669 | 0.029 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08748 | 0.966 |
26DAP/20DAP | 1.5144 | 0.13 |
34DAP/26DAP | 1.10808 | 0.542 |
51DAP/34DAP | 1.30517 | 0.339 |
52DAP/51DAP | 1.07023 | 0.708 |
53DAP/52DAP | 0.94978 | 0.79 |
55DAP/53DAP | 0.89782 | 0.53 |
57DAP/55DAP | 1.10376 | 0.955 |
62DAP/57DAP | 0.91097 | 0.681 |
68DAP/62DAP | 0.88555 | 0.641 |
68DAP/14DAP | 0.87895 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.77646 | 0.016 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.07736 | 0.666 |
Mature Green Tomato/Ripe Tomato | 0.68663 | 0.047 |
Immature Eggplant/Mature Eggplant | 1.0949 | 0.363 |
Ripe Pepper/Ripe Tomato | 0.49801 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.64447 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97743 | 0.961 |
1-1-2/M82 | 1.30612 | 1 |
12-2/M82 | 1.03238 | 1 |
12-4/M82 | 0.92087 | 0.282 |
1-3/M82 | 1.83171 | 0.26 |
2-1-1/M82 | 1.15309 | 0.764 |
2-1/M82 | 0.66316 | 0.345 |
2-6/M82 | 1.07211 | 0.695 |
3-2/M82 | 1.01576 | 1 |
4-1-1/M82 | 1.1031 | 1 |
4-1/M82 | 1.25926 | 1 |
4-3-2/M82 | 1.16495 | 0.508 |
4-3/M82 | 1.31634 | 1 |
5-3/M82 | 1.0692 | 1 |
6-2/M82 | 0.93247 | 1 |
6-3/M82 | 1.00714 | 1 |
7-1/M82 | 0.84193 | 0.803 |
7-2/M82 | 1.16307 | 0.385 |
9-3-2/M82 | 1.20583 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14996 | 0.084 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.17127 | |
DC3000/delta hrp 6h | 1.13082 | 1 |
DC3000/delta hrp 12h | 0.90717 | 1 |
DC3000/delta hrp 24h | 1.13931 | 0.221 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.37731 | 0.229 |
DC3000 delta B/DC3000 delta AB | 1.2907 | 0.137 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.12928 | 1 |
Exp 36h | 1.02408 | 1 |
Exp 60h | 1.15925 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98201 | 1 |
Var 0h | 0.85713 | 0.933 |
Var 12h I row2-row1 | 0.96595 | 0.77 |
Var 12h NI row2-row1 | 1.13379 | 0.649 |
Var 36h I row2-row1 | 1.07533 | 1 |
Var 36h NI row2-row1 | 0.94411 | 0.706 |
Var 60h I row2-row1 | 0.88024 | 0.287 |
Var 60h NI row2-row1 | 0.8879 | 0.516 |
Time course 0hI-0hNI | 0.97843 | 0.911 |
Time course 12hI-12hNI | 1.00199 | 1 |
Time course 36hI-36hNI | 1.14183 | 0.355 |
Time course 60hI-60hNI | 1.71004 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00797 | 0.921 |
transgenic ySAMdc/azygous control (breaker) | 0.79521 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.00272 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03065 | 0.687 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.68848 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.85228 | 1 |
Manapal/WT (break) | 0.928 | 1 |
Manapal/WT (red) | 0.95751 | 0.503 |
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