Expression of 1-1-8.4.11.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.71903 | 0.602 |
27DAP/17DAP | 1.58219 | 0.86 |
39DAP/27DAP | 0.92809 | 0.733 |
41DAP/39DAP | 1.00518 | 0.726 |
42DAP/41DAP | 1.03729 | 1 |
43DAP/42DAP | 1.54483 | 0.613 |
47DAP/43DAP | 0.47107 | 0.053 |
52DAP/47DAP | 1.55166 | 0.444 |
57DAP/52DAP | 1.03616 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.20476 | 0.007 |
17DAP/reference | 1.37252 | 0.022 |
27DAP/reference | 1.01599 | 0.867 |
39DAP/reference | 1.08203 | 0.393 |
41DAP/reference | 0.95577 | 0.542 |
42DAP/reference | 1.25573 | 0.016 |
43DAP/reference | 1.12035 | 0.445 |
47DAP/reference | 0.88768 | 0.098 |
52DAP/reference | 0.8772 | 0.162 |
57DAP/reference | 0.76423 | 0.025 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82678 | 0.442 |
27DAP/17DAP | 0.41613 | |
39DAP/27DAP | 1.08055 | 0.541 |
41DAP/39DAP | 1.56632 | 0.781 |
42DAP/41DAP | 0.96395 | 0.695 |
43DAP/42DAP | 1.65281 | 0.627 |
47DAP/43DAP | 1.11534 | 1 |
52DAP/47DAP | N/A | N/A |
57DAP/52DAP | 0.75973 | |
57DAP/7DAP | 0.81253 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.34013 | |
17DAP/reference | N/A | N/A |
27DAP/reference | 1.37389 | |
39DAP/reference | 0.07119 | |
41DAP/reference | 0.75172 | |
42DAP/reference | N/A | N/A |
43DAP/reference | N/A | N/A |
47DAP/reference | 0.70564 | 0.04 |
52DAP/reference | N/A | N/A |
57DAP/reference | 1.38039 | |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.52902 | 0.129 |
17DAP/reference | 1.67065 | 0.068 |
27DAP/reference | 1.13292 | 0.516 |
39DAP/reference | 0.80458 | 0.113 |
41DAP/reference | 0.76343 | 0.023 |
42DAP/reference | 0.98822 | 0.594 |
43DAP/reference | 0.96431 | 0.569 |
47DAP/reference | 0.88814 | 0.168 |
52DAP/reference | 0.65648 | 0.005 |
57DAP/reference | 0.66824 | 0.005 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.16071 | |
17DAP/reference | 2.52401 | 0.011 |
27DAP/reference | 1.20094 | |
39DAP/reference | 0.8846 | 0.007 |
41DAP/reference | 1.03218 | |
42DAP/reference | 1.18583 | |
43DAP/reference | 2.29487 | 0.028 |
47DAP/reference | 2.35524 | 0.005 |
52DAP/reference | 1.19966 | 0.312 |
57DAP/reference | 2.36997 | 0.01 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.55169 | 0.966 |
26DAP/20DAP | 0.90962 | |
34DAP/26DAP | 1.08325 | 1 |
51DAP/34DAP | 0.3945 | |
52DAP/51DAP | 1.14878 | 1 |
53DAP/52DAP | 1.41899 | 0.027 |
55DAP/53DAP | 0.90716 | 0.53 |
57DAP/55DAP | 1.10565 | 0.955 |
62DAP/57DAP | 0.97799 | 0.994 |
68DAP/62DAP | 0.96298 | 0.834 |
68DAP/14DAP | 0.90555 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.14719 | 0.663 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.00138 | 0.863 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.40922 | 0.062 |
Ripe Pepper/Ripe Tomato | 1.46951 | 0.258 |
Mature Eggplant/Ripe Tomato | 4.11136 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 2.28393 | |
IL2-6/WTpooled | 0.58569 | 0.348 |
IL7-5/WTpooled | 0.96139 | |
IL7-3/WTpooled | 0.91128 | 0.418 |
IL12-4/WTpooled | 2.94747 | 0.516 |
IL1-4/WTpooled | 1.36338 | 1 |
WT/WTpooled | 0.9225 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 1.34083 | 1 |
DC3000/delta hrp 12h | 1.20487 | 1 |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.8988 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | 0.16019 | |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90505 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.46368 | 0.248 |
transgenic ySAMdc/azygous control (red) | 3.22494 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.71469 | 0.087 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.29562 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 5.39633 | 0.083 |
Manapal/WT (break) | 7.67413 | 0.13 |
Manapal/WT (red) | 3.56129 | 0.126 |
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