Expression of 1-1-8.4.11.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.719030.602
27DAP/17DAP1.582190.86
39DAP/27DAP0.928090.733
41DAP/39DAP1.005180.726
42DAP/41DAP1.037291
43DAP/42DAP1.544830.613
47DAP/43DAP0.471070.053
52DAP/47DAP1.551660.444
57DAP/52DAP1.036160.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.204760.007
17DAP/reference1.372520.022
27DAP/reference1.015990.867
39DAP/reference1.082030.393
41DAP/reference0.955770.542
42DAP/reference1.255730.016
43DAP/reference1.120350.445
47DAP/reference0.887680.098
52DAP/reference0.87720.162
57DAP/reference0.764230.025

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.826780.442
27DAP/17DAP0.41613
39DAP/27DAP1.080550.541
41DAP/39DAP1.566320.781
42DAP/41DAP0.963950.695
43DAP/42DAP1.652810.627
47DAP/43DAP1.115341
52DAP/47DAPN/AN/A
57DAP/52DAP0.75973
57DAP/7DAP0.812531

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.34013
17DAP/referenceN/AN/A
27DAP/reference1.37389
39DAP/reference0.07119
41DAP/reference0.75172
42DAP/referenceN/AN/A
43DAP/referenceN/AN/A
47DAP/reference0.705640.04
52DAP/referenceN/AN/A
57DAP/reference1.38039

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.529020.129
17DAP/reference1.670650.068
27DAP/reference1.132920.516
39DAP/reference0.804580.113
41DAP/reference0.763430.023
42DAP/reference0.988220.594
43DAP/reference0.964310.569
47DAP/reference0.888140.168
52DAP/reference0.656480.005
57DAP/reference0.668240.005

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.16071
17DAP/reference2.524010.011
27DAP/reference1.20094
39DAP/reference0.88460.007
41DAP/reference1.03218
42DAP/reference1.18583
43DAP/reference2.294870.028
47DAP/reference2.355240.005
52DAP/reference1.199660.312
57DAP/reference2.369970.01

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.551690.966
26DAP/20DAP0.90962
34DAP/26DAP1.083251
51DAP/34DAP0.3945
52DAP/51DAP1.148781
53DAP/52DAP1.418990.027
55DAP/53DAP0.907160.53
57DAP/55DAP1.105650.955
62DAP/57DAP0.977990.994
68DAP/62DAP0.962980.834
68DAP/14DAP0.905551

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.147190.663

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.001380.863
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.409220.062
Ripe Pepper/Ripe Tomato1.469510.258
Mature Eggplant/Ripe Tomato4.11136

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled2.28393
IL2-6/WTpooled0.585690.348
IL7-5/WTpooled0.96139
IL7-3/WTpooled0.911280.418
IL12-4/WTpooled2.947470.516
IL1-4/WTpooled1.363381
WT/WTpooled0.92251

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h1.340831
DC3000/delta hrp 12h1.204871
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.89881
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNI0.16019
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.905050.246
transgenic ySAMdc/azygous control (breaker)1.463680.248
transgenic ySAMdc/azygous control (red)3.224940.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.714690.087

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.295620.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)5.396330.083
Manapal/WT (break)7.674130.13
Manapal/WT (red)3.561290.126