Expression of 1-1-8.4.11.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04121 | 0.912 |
27DAP/17DAP | 0.87476 | 0.67 |
39DAP/27DAP | 0.99106 | 0.798 |
41DAP/39DAP | 1.08909 | 0.67 |
42DAP/41DAP | 0.8504 | 0.774 |
43DAP/42DAP | 1.05706 | 1 |
47DAP/43DAP | 0.86773 | 0.54 |
52DAP/47DAP | 0.98656 | 0.87 |
57DAP/52DAP | 0.93573 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9041 | 0.246 |
17DAP/reference | 0.88004 | 0.138 |
27DAP/reference | 0.78286 | 0.015 |
39DAP/reference | 0.87219 | 0.022 |
41DAP/reference | 0.72582 | 0.009 |
42DAP/reference | 1.68514 | 0.001 |
43DAP/reference | 0.93453 | 0.36 |
47DAP/reference | 1.35865 | 0.524 |
52DAP/reference | 0.8187 | 0.162 |
57DAP/reference | 0.93391 | 0.21 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13486 | 0.899 |
27DAP/17DAP | 0.96325 | 0.878 |
39DAP/27DAP | 1.18214 | 0.383 |
41DAP/39DAP | 1.81471 | 0.266 |
42DAP/41DAP | 1.18767 | 0.514 |
43DAP/42DAP | 1.1372 | 0.513 |
47DAP/43DAP | 0.96043 | 0.843 |
52DAP/47DAP | 1.10818 | 0.844 |
57DAP/52DAP | 1.55618 | 0.224 |
57DAP/7DAP | 0.77947 | 0.157 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88324 | 0.203 |
17DAP/reference | 1.10648 | 0.199 |
27DAP/reference | 1.1463 | 0.16 |
39DAP/reference | 1.04531 | 0.705 |
41DAP/reference | 1.0019 | 0.778 |
42DAP/reference | 0.84984 | 0.082 |
43DAP/reference | 0.84288 | 0.192 |
47DAP/reference | 1.62163 | 0.096 |
52DAP/reference | 1.01874 | 1 |
57DAP/reference | 0.96945 | 0.396 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04136 | 0.884 |
17DAP/reference | 1.15673 | 0.171 |
27DAP/reference | 1.17891 | 0.917 |
39DAP/reference | 1.10948 | 1 |
41DAP/reference | 1.42496 | 0.018 |
42DAP/reference | 1.62478 | 0.025 |
43DAP/reference | 0.96063 | 0.468 |
47DAP/reference | 1.08238 | 0.4 |
52DAP/reference | 1.24898 | 0.3 |
57DAP/reference | 1.03823 | 0.754 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11613 | 0.23 |
17DAP/reference | 0.94698 | 0.55 |
27DAP/reference | 1.33567 | 0.02 |
39DAP/reference | 1.08466 | 0.064 |
41DAP/reference | 1.1919 | 0.425 |
42DAP/reference | 1.1159 | 0.34 |
43DAP/reference | 1.21214 | 0.128 |
47DAP/reference | 1.65935 | 0.006 |
52DAP/reference | 2.07993 | 0.042 |
57DAP/reference | 1.98718 | 0.007 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93979 | 1 |
26DAP/20DAP | 1.08338 | 0.974 |
34DAP/26DAP | 1.33271 | 0.071 |
51DAP/34DAP | 1.08128 | 0.962 |
52DAP/51DAP | 1.16857 | 0.522 |
53DAP/52DAP | 1.0269 | 0.909 |
55DAP/53DAP | 0.89291 | 0.577 |
57DAP/55DAP | 0.82536 | 0.36 |
62DAP/57DAP | 1.37083 | 0.303 |
68DAP/62DAP | 0.98338 | 0.863 |
68DAP/14DAP | 1.11933 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.68617 | 0.033 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.18267 | 0.287 |
Mature Green Tomato/Ripe Tomato | 0.41822 | 0.036 |
Immature Eggplant/Mature Eggplant | 0.89934 | 0.493 |
Ripe Pepper/Ripe Tomato | 0.4584 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.8033 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04762 | |
1-1-2/M82 | 1.01528 | 1 |
12-2/M82 | 0.921 | |
12-4/M82 | 1.56249 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.21397 | 0.4 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.17297 | |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.89487 | |
7-1/M82 | 0.96864 | |
7-2/M82 | 0.8822 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.87598 | 1 |
IL2-6/WTpooled | 1.30317 | 0.788 |
IL7-5/WTpooled | 0.95154 | 1 |
IL7-3/WTpooled | 0.94091 | 1 |
IL12-4/WTpooled | 1.59492 | 0.422 |
IL1-4/WTpooled | 0.84733 | 0.476 |
WT/WTpooled | 0.97295 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.22982 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03113 | 0.921 |
DC3000/delta hrp 6h | 1.00911 | 1 |
DC3000/delta hrp 12h | 1.12157 | 1 |
DC3000/delta hrp 24h | 0.99307 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21315 | |
DC3000 delta B/DC3000 delta AB | 1.08993 | 0.571 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07312 | 1 |
Exp 36h | 1.07262 | 0.693 |
Exp 60h | 1.0758 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96463 | 1 |
Var 0h | 1.38147 | 0.936 |
Var 12h I row2-row1 | 1.04322 | 0.692 |
Var 12h NI row2-row1 | 1.2838 | 0.34 |
Var 36h I row2-row1 | 0.86647 | 1 |
Var 36h NI row2-row1 | 0.71775 | 0.61 |
Var 60h I row2-row1 | 0.8584 | 0.374 |
Var 60h NI row2-row1 | 1.04819 | 1 |
Time course 0hI-0hNI | 1.10079 | 0.799 |
Time course 12hI-12hNI | 1.28639 | 0.037 |
Time course 36hI-36hNI | 1.7601 | 0.004 |
Time course 60hI-60hNI | 1.93054 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98473 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 0.83068 | 0.119 |
transgenic ySAMdc/azygous control (red) | 0.94429 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98874 | 0.431 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.75368 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.90002 | 1 |
Manapal/WT (break) | 0.94911 | 1 |
Manapal/WT (red) | 0.93926 | 0.503 |
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