Expression of 1-1-8.4.11.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.041210.912
27DAP/17DAP0.874760.67
39DAP/27DAP0.991060.798
41DAP/39DAP1.089090.67
42DAP/41DAP0.85040.774
43DAP/42DAP1.057061
47DAP/43DAP0.867730.54
52DAP/47DAP0.986560.87
57DAP/52DAP0.935730.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.90410.246
17DAP/reference0.880040.138
27DAP/reference0.782860.015
39DAP/reference0.872190.022
41DAP/reference0.725820.009
42DAP/reference1.685140.001
43DAP/reference0.934530.36
47DAP/reference1.358650.524
52DAP/reference0.81870.162
57DAP/reference0.933910.21

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.134860.899
27DAP/17DAP0.963250.878
39DAP/27DAP1.182140.383
41DAP/39DAP1.814710.266
42DAP/41DAP1.187670.514
43DAP/42DAP1.13720.513
47DAP/43DAP0.960430.843
52DAP/47DAP1.108180.844
57DAP/52DAP1.556180.224
57DAP/7DAP0.779470.157

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.883240.203
17DAP/reference1.106480.199
27DAP/reference1.14630.16
39DAP/reference1.045310.705
41DAP/reference1.00190.778
42DAP/reference0.849840.082
43DAP/reference0.842880.192
47DAP/reference1.621630.096
52DAP/reference1.018741
57DAP/reference0.969450.396

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.041360.884
17DAP/reference1.156730.171
27DAP/reference1.178910.917
39DAP/reference1.109481
41DAP/reference1.424960.018
42DAP/reference1.624780.025
43DAP/reference0.960630.468
47DAP/reference1.082380.4
52DAP/reference1.248980.3
57DAP/reference1.038230.754

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.116130.23
17DAP/reference0.946980.55
27DAP/reference1.335670.02
39DAP/reference1.084660.064
41DAP/reference1.19190.425
42DAP/reference1.11590.34
43DAP/reference1.212140.128
47DAP/reference1.659350.006
52DAP/reference2.079930.042
57DAP/reference1.987180.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.939791
26DAP/20DAP1.083380.974
34DAP/26DAP1.332710.071
51DAP/34DAP1.081280.962
52DAP/51DAP1.168570.522
53DAP/52DAP1.02690.909
55DAP/53DAP0.892910.577
57DAP/55DAP0.825360.36
62DAP/57DAP1.370830.303
68DAP/62DAP0.983380.863
68DAP/14DAP1.119331

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.686170.033

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.182670.287
Mature Green Tomato/Ripe Tomato0.418220.036
Immature Eggplant/Mature Eggplant0.899340.493
Ripe Pepper/Ripe Tomato0.45840.224
Mature Eggplant/Ripe Tomato0.8033

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.04762
1-1-2/M821.015281
12-2/M820.921
12-4/M821.56249
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.213970.4
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.17297
6-2/M82N/AN/A
6-3/M820.89487
7-1/M820.96864
7-2/M820.8822
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.875981
IL2-6/WTpooled1.303170.788
IL7-5/WTpooled0.951541
IL7-3/WTpooled0.940911
IL12-4/WTpooled1.594920.422
IL1-4/WTpooled0.847330.476
WT/WTpooled0.972951

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.229820.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.031130.921
DC3000/delta hrp 6h1.009111
DC3000/delta hrp 12h1.121571
DC3000/delta hrp 24h0.993071

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.21315
DC3000 delta B/DC3000 delta AB1.089930.571

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.073121
Exp 36h1.072620.693
Exp 60h1.07580.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.964631
Var 0h1.381470.936
Var 12h I row2-row11.043220.692
Var 12h NI row2-row11.28380.34
Var 36h I row2-row10.866471
Var 36h NI row2-row10.717750.61
Var 60h I row2-row10.85840.374
Var 60h NI row2-row11.048191
Time course 0hI-0hNI1.100790.799
Time course 12hI-12hNI1.286390.037
Time course 36hI-36hNI1.76010.004
Time course 60hI-60hNI1.930540.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.984730.722
transgenic ySAMdc/azygous control (breaker)0.830680.119
transgenic ySAMdc/azygous control (red)0.944291

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.988740.431

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.753680.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.900021
Manapal/WT (break)0.949111
Manapal/WT (red)0.939260.503