Expression of 1-1-8.4.11.9
Experiment: Wild type tomato fruit development (set 1)
| hybridization | ratio | FDR (corrected p value) |
|---|
| 17DAP/7DAP | 1.08756 | 0.725 |
| 27DAP/17DAP | 1.10756 | 0.881 |
| 39DAP/27DAP | 1.09229 | 0.919 |
| 41DAP/39DAP | 1.01849 | 0.964 |
| 42DAP/41DAP | 0.94822 | 1 |
| 43DAP/42DAP | 0.95726 | 0.892 |
| 47DAP/43DAP | 0.87736 | 0.603 |
| 52DAP/47DAP | 1.14965 | 0.721 |
| 57DAP/52DAP | 1.02639 | 1 |
Experiment: Wild type tomato fruit development (set 2)
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 1.12676 | 0.366 |
| 17DAP/reference | 0.95742 | 0.393 |
| 27DAP/reference | 0.94808 | 0.359 |
| 39DAP/reference | 0.90529 | 0.437 |
| 41DAP/reference | 0.91214 | 0.085 |
| 42DAP/reference | 0.95502 | 0.134 |
| 43DAP/reference | 1.03617 | 0.403 |
| 47DAP/reference | 0.93778 | 0.083 |
| 52DAP/reference | 0.85321 | 0.105 |
| 57DAP/reference | 0.88216 | 0.042 |
Experiment: tomato Never-ripe mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 17DAP/7DAP | 1.02842 | 0.812 |
| 27DAP/17DAP | 1.03073 | 0.924 |
| 39DAP/27DAP | 0.98879 | 0.964 |
| 41DAP/39DAP | 0.98542 | 0.997 |
| 42DAP/41DAP | 1.07545 | 0.526 |
| 43DAP/42DAP | 0.89513 | 0.097 |
| 47DAP/43DAP | 1.01161 | 0.939 |
| 52DAP/47DAP | 0.97575 | 0.9 |
| 57DAP/52DAP | 1.00756 | 1 |
| 57DAP/7DAP | 1.07283 | 0.365 |
Experiment: tomato rin mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 1.09561 | 0.263 |
| 17DAP/reference | 1.19309 | 0.006 |
| 27DAP/reference | 1.16382 | 0.018 |
| 39DAP/reference | 1.24582 | 0.006 |
| 41DAP/reference | 1.2042 | 0.025 |
| 42DAP/reference | 1.22313 | 0.013 |
| 43DAP/reference | 1.19574 | 0.008 |
| 47DAP/reference | 1.13936 | 0.259 |
| 52DAP/reference | 1.20929 | 0.017 |
| 57DAP/reference | 1.27038 | 0.004 |
Experiment: tomato nor mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 1.12229 | 0.164 |
| 17DAP/reference | 1.03585 | 0.303 |
| 27DAP/reference | 0.93372 | 0.292 |
| 39DAP/reference | 0.95859 | 0.257 |
| 41DAP/reference | 1.08849 | 0.459 |
| 42DAP/reference | 0.94708 | 0.05 |
| 43DAP/reference | 0.99653 | 0.761 |
| 47DAP/reference | 1.05457 | 0.232 |
| 52DAP/reference | 0.89772 | 0.027 |
| 57DAP/reference | 1.0115 | 0.98 |
Experiment: tomato hp1 mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 1.32561 | 0.033 |
| 17DAP/reference | 1.00853 | 1 |
| 27DAP/reference | 1.1576 | 0.039 |
| 39DAP/reference | 1.17005 | 0.01 |
| 41DAP/reference | 1.11586 | 0.276 |
| 42DAP/reference | 1.08595 | 0.313 |
| 43DAP/reference | 1.06144 | 0.58 |
| 47DAP/reference | 0.92549 | 0.125 |
| 52DAP/reference | 1.05534 | 0.674 |
| 57DAP/reference | 0.81087 | 0.127 |
Experiment: Wild type pepper fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 20DAP/14DAP | 0.937 | 1 |
| 26DAP/20DAP | 1.02165 | 1 |
| 34DAP/26DAP | 1.01436 | 1 |
| 51DAP/34DAP | 0.90294 | 0.537 |
| 52DAP/51DAP | 1.03455 | 0.77 |
| 53DAP/52DAP | 1.02613 | 0.901 |
| 55DAP/53DAP | 1.06363 | 0.415 |
| 57DAP/55DAP | 0.92687 | 0.647 |
| 62DAP/57DAP | 1.01873 | 1 |
| 68DAP/62DAP | 1.10836 | 0.869 |
| 68DAP/14DAP | 1.09147 | 0.915 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
| hybridization | ratio | FDR (corrected p value) |
|---|
| Tomato Breaker/Pepper Breaker | 1.19604 | 0.246 |
Experiment: Solanaceae fruit comparison
| hybridization | ratio | FDR (corrected p value) |
|---|
| Green Pepper/Ripe Pepper | 2.1519 | 0.058 |
| Mature Green Tomato/Ripe Tomato | 1.22576 | 0.331 |
| Immature Eggplant/Mature Eggplant | 1.28691 | 0.051 |
| Ripe Pepper/Ripe Tomato | 0.44972 | 0.224 |
| Mature Eggplant/Ripe Tomato | 1.07734 | 1 |
Experiment: IL carotenoid
| hybridization | ratio | FDR (corrected p value) |
|---|
| 11-1/M82 | 0.92248 | 0.944 |
| 1-1-2/M82 | 1.06329 | 1 |
| 12-2/M82 | 1.00336 | 1 |
| 12-4/M82 | 0.94881 | 1 |
| 1-3/M82 | 1.05513 | 1 |
| 2-1-1/M82 | 1.06536 | |
| 2-1/M82 | 0.95609 | 1 |
| 2-6/M82 | 0.97572 | 1 |
| 3-2/M82 | 1.02631 | 0.463 |
| 4-1-1/M82 | 1.13502 | 1 |
| 4-1/M82 | 0.92694 | 1 |
| 4-3-2/M82 | 1.08727 | 1 |
| 4-3/M82 | 1.03378 | 1 |
| 5-3/M82 | 1.04699 | 1 |
| 6-2/M82 | 0.99791 | 1 |
| 6-3/M82 | 1.01564 | 1 |
| 7-1/M82 | 0.97647 | 1 |
| 7-2/M82 | 1.05234 | 0.385 |
| 9-3-2/M82 | 1.00489 | 1 |
Experiment: Tomato introgression line transcript analysis
| hybridization | ratio | FDR (corrected p value) |
|---|
| IL4-4/WTpooled | 1.08068 | 0.277 |
| IL2-6/WTpooled | 1.11458 | 0.584 |
| IL7-5/WTpooled | 1.10122 | 0.792 |
| IL7-3/WTpooled | 1.03965 | 1 |
| IL12-4/WTpooled | 1.03032 | 0.532 |
| IL1-4/WTpooled | 1.02733 | 1 |
| WT/WTpooled | 0.95394 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
| hybridization | ratio | FDR (corrected p value) |
|---|
| 10 h post inoculation | 0.98607 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
| hybridization | ratio | FDR (corrected p value) |
|---|
| DC3000/delat hrp 0h | 0.95071 | 1 |
| DC3000/delta hrp 6h | 1.10778 | 1 |
| DC3000/delta hrp 12h | 0.80271 | 1 |
| DC3000/delta hrp 24h | 0.96962 | 0.887 |
Experiment: DC3000 effector mutants
| hybridization | ratio | FDR (corrected p value) |
|---|
| DC3000 delta A/DC3000 delta AB | 1.09517 | 0.183 |
| DC3000 delta B/DC3000 delta AB | 1.17686 | 0.279 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
| hybridization | ratio | FDR (corrected p value) |
|---|
| Exp 12h | 1.1065 | 1 |
| Exp 36h | 1.01866 | 1 |
| Exp 60h | 0.80536 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
| hybridization | ratio | FDR (corrected p value) |
|---|
| self-self | 1.01843 | 1 |
| Var 0h | 1.00525 | 1 |
| Var 12h I row2-row1 | 1.08371 | 0.406 |
| Var 12h NI row2-row1 | 0.96604 | 0.906 |
| Var 36h I row2-row1 | 0.92556 | 1 |
| Var 36h NI row2-row1 | 0.97769 | 0.791 |
| Var 60h I row2-row1 | 1.0733 | 0.543 |
| Var 60h NI row2-row1 | 1.03032 | 1 |
| Time course 0hI-0hNI | 1.02641 | 0.833 |
| Time course 12hI-12hNI | 1.02993 | 0.777 |
| Time course 36hI-36hNI | 1.0224 | 0.975 |
| Time course 60hI-60hNI | 1.44763 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
| hybridization | ratio | FDR (corrected p value) |
|---|
| transgenic ySAMdc/azygous control (mature green) | 0.96885 | 0.662 |
| transgenic ySAMdc/azygous control (breaker) | 1.42458 | 0.178 |
| transgenic ySAMdc/azygous control (red) | 1.01789 | 1 |
Experiment: Tomato root culture and Al treatment
| hybridization | ratio | FDR (corrected p value) |
|---|
| Al-treated/control | 1.02984 | 0.372 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
| hybridization | ratio | FDR (corrected p value) |
|---|
| salt-treated/no salt | 0.8577 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
| hybridization | ratio | FDR (corrected p value) |
|---|
| Manapal/WT (mature green) | 0.77484 | 1 |
| Manapal/WT (break) | 0.797 | 0.333 |
| Manapal/WT (red) | 1.25162 | 0.222 |
|
|
