Expression of 1-1-8.4.12.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.477750.264
27DAP/17DAP1.377960.747
39DAP/27DAP1.364340.206
41DAP/39DAP0.711650.103
42DAP/41DAP1.250430.871
43DAP/42DAP1.037291
47DAP/43DAP0.983070.89
52DAP/47DAP1.060640.957
57DAP/52DAP1.015261

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.873860.182
17DAP/reference1.266050.045
27DAP/reference1.384750.024
39DAP/reference1.466930.027
41DAP/reference1.289930.013
42DAP/reference1.415050.001
43DAP/reference1.604260.007
47DAP/reference1.904530.001
52DAP/reference1.863590.007
57DAP/reference1.724610.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.945880.376
27DAP/17DAP1.035490.912
39DAP/27DAP1.075630.615
41DAP/39DAP1.089410.579
42DAP/41DAP0.962140.649
43DAP/42DAP1.030450.585
47DAP/43DAP0.990870.961
52DAP/47DAP1.007251
57DAP/52DAP0.975730.66
57DAP/7DAP0.984771

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.82220.051
17DAP/reference1.586390.006
27DAP/reference1.499480.007
39DAP/reference1.629880.006
41DAP/reference1.452940.009
42DAP/reference1.464320.009
43DAP/reference1.284530.007
47DAP/reference1.743780.014
52DAP/reference1.379520.092
57DAP/reference1.513190.017

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.884930.277
17DAP/reference1.237040.034
27DAP/reference1.685880.02
39DAP/reference1.619650.011
41DAP/reference1.29340.126
42DAP/reference1.43240.031
43DAP/reference1.073120.863
47DAP/reference1.31880.116
52DAP/reference1.369080.006
57DAP/reference1.189320.15

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.228180.098
17DAP/reference1.049360.944
27DAP/reference1.435450.015
39DAP/reference1.426380.018
41DAP/reference1.20280.012
42DAP/reference1.35280.035
43DAP/reference1.478470.02
47DAP/reference1.566760.007
52DAP/reference1.452920.03
57DAP/reference2.41220.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP2.639360.966
26DAP/20DAP0.991941
34DAP/26DAP0.949390.826
51DAP/34DAP1.186180.143
52DAP/51DAP0.843590.151
53DAP/52DAP1.076720.458
55DAP/53DAP0.978910.82
57DAP/55DAP0.858770.458
62DAP/57DAP0.81920.28
68DAP/62DAP1.084680.747
68DAP/14DAP1.473960.031

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.758160.023

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.759930.215
Mature Green Tomato/Ripe Tomato1.179620.267
Immature Eggplant/Mature Eggplant0.977830.912
Ripe Pepper/Ripe Tomato1.769191
Mature Eggplant/Ripe Tomato0.999181

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.752480.613
1-1-2/M821.071761
12-2/M820.743050.74
12-4/M820.939571
1-3/M821.964620.248
2-1-1/M821.159610.764
2-1/M820.774090.74
2-6/M820.813061
3-2/M821.32011
4-1-1/M820.891361
4-1/M821.041321
4-3-2/M820.860611
4-3/M820.799830.551
5-3/M820.927060.642
6-2/M821.13681
6-3/M821.080251
7-1/M821.044711
7-2/M821.013961
9-3-2/M820.859980.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.845420.277
IL2-6/WTpooled0.494170.348
IL7-5/WTpooled1.284410.792
IL7-3/WTpooled1.762470.362
IL12-4/WTpooled1.344510.516
IL1-4/WTpooled0.908340.834
WT/WTpooled0.922171

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.177220.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.082860.875
DC3000/delta hrp 6h1.046151
DC3000/delta hrp 12h1.016181
DC3000/delta hrp 24h0.990051

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.082970.355
DC3000 delta B/DC3000 delta AB1.078380.386

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.105891
Exp 36h1.00071
Exp 60h1.015021

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.986581
Var 0h0.628631
Var 12h I row2-row11.10390.379
Var 12h NI row2-row10.920630.627
Var 36h I row2-row11.118240.489
Var 36h NI row2-row10.908170.584
Var 60h I row2-row10.954470.582
Var 60h NI row2-row10.994231
Time course 0hI-0hNI0.988890.988
Time course 12hI-12hNI1.052070.445
Time course 36hI-36hNI1.223420.005
Time course 60hI-60hNI1.36580.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.050250.511
transgenic ySAMdc/azygous control (breaker)1.105890.166
transgenic ySAMdc/azygous control (red)0.903721

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control2.211040.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.847180.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.778781
Manapal/WT (break)0.770360.333
Manapal/WT (red)1.799230.142