Expression of 1-1-8.4.12.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.47775 | 0.264 |
27DAP/17DAP | 1.37796 | 0.747 |
39DAP/27DAP | 1.36434 | 0.206 |
41DAP/39DAP | 0.71165 | 0.103 |
42DAP/41DAP | 1.25043 | 0.871 |
43DAP/42DAP | 1.03729 | 1 |
47DAP/43DAP | 0.98307 | 0.89 |
52DAP/47DAP | 1.06064 | 0.957 |
57DAP/52DAP | 1.01526 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87386 | 0.182 |
17DAP/reference | 1.26605 | 0.045 |
27DAP/reference | 1.38475 | 0.024 |
39DAP/reference | 1.46693 | 0.027 |
41DAP/reference | 1.28993 | 0.013 |
42DAP/reference | 1.41505 | 0.001 |
43DAP/reference | 1.60426 | 0.007 |
47DAP/reference | 1.90453 | 0.001 |
52DAP/reference | 1.86359 | 0.007 |
57DAP/reference | 1.72461 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94588 | 0.376 |
27DAP/17DAP | 1.03549 | 0.912 |
39DAP/27DAP | 1.07563 | 0.615 |
41DAP/39DAP | 1.08941 | 0.579 |
42DAP/41DAP | 0.96214 | 0.649 |
43DAP/42DAP | 1.03045 | 0.585 |
47DAP/43DAP | 0.99087 | 0.961 |
52DAP/47DAP | 1.00725 | 1 |
57DAP/52DAP | 0.97573 | 0.66 |
57DAP/7DAP | 0.98477 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.8222 | 0.051 |
17DAP/reference | 1.58639 | 0.006 |
27DAP/reference | 1.49948 | 0.007 |
39DAP/reference | 1.62988 | 0.006 |
41DAP/reference | 1.45294 | 0.009 |
42DAP/reference | 1.46432 | 0.009 |
43DAP/reference | 1.28453 | 0.007 |
47DAP/reference | 1.74378 | 0.014 |
52DAP/reference | 1.37952 | 0.092 |
57DAP/reference | 1.51319 | 0.017 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88493 | 0.277 |
17DAP/reference | 1.23704 | 0.034 |
27DAP/reference | 1.68588 | 0.02 |
39DAP/reference | 1.61965 | 0.011 |
41DAP/reference | 1.2934 | 0.126 |
42DAP/reference | 1.4324 | 0.031 |
43DAP/reference | 1.07312 | 0.863 |
47DAP/reference | 1.3188 | 0.116 |
52DAP/reference | 1.36908 | 0.006 |
57DAP/reference | 1.18932 | 0.15 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22818 | 0.098 |
17DAP/reference | 1.04936 | 0.944 |
27DAP/reference | 1.43545 | 0.015 |
39DAP/reference | 1.42638 | 0.018 |
41DAP/reference | 1.2028 | 0.012 |
42DAP/reference | 1.3528 | 0.035 |
43DAP/reference | 1.47847 | 0.02 |
47DAP/reference | 1.56676 | 0.007 |
52DAP/reference | 1.45292 | 0.03 |
57DAP/reference | 2.4122 | 0.007 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 2.63936 | 0.966 |
26DAP/20DAP | 0.99194 | 1 |
34DAP/26DAP | 0.94939 | 0.826 |
51DAP/34DAP | 1.18618 | 0.143 |
52DAP/51DAP | 0.84359 | 0.151 |
53DAP/52DAP | 1.07672 | 0.458 |
55DAP/53DAP | 0.97891 | 0.82 |
57DAP/55DAP | 0.85877 | 0.458 |
62DAP/57DAP | 0.8192 | 0.28 |
68DAP/62DAP | 1.08468 | 0.747 |
68DAP/14DAP | 1.47396 | 0.031 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.75816 | 0.023 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.75993 | 0.215 |
Mature Green Tomato/Ripe Tomato | 1.17962 | 0.267 |
Immature Eggplant/Mature Eggplant | 0.97783 | 0.912 |
Ripe Pepper/Ripe Tomato | 1.76919 | 1 |
Mature Eggplant/Ripe Tomato | 0.99918 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.75248 | 0.613 |
1-1-2/M82 | 1.07176 | 1 |
12-2/M82 | 0.74305 | 0.74 |
12-4/M82 | 0.93957 | 1 |
1-3/M82 | 1.96462 | 0.248 |
2-1-1/M82 | 1.15961 | 0.764 |
2-1/M82 | 0.77409 | 0.74 |
2-6/M82 | 0.81306 | 1 |
3-2/M82 | 1.32011 | |
4-1-1/M82 | 0.89136 | 1 |
4-1/M82 | 1.04132 | 1 |
4-3-2/M82 | 0.86061 | 1 |
4-3/M82 | 0.79983 | 0.551 |
5-3/M82 | 0.92706 | 0.642 |
6-2/M82 | 1.1368 | 1 |
6-3/M82 | 1.08025 | 1 |
7-1/M82 | 1.04471 | 1 |
7-2/M82 | 1.01396 | 1 |
9-3-2/M82 | 0.85998 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.84542 | 0.277 |
IL2-6/WTpooled | 0.49417 | 0.348 |
IL7-5/WTpooled | 1.28441 | 0.792 |
IL7-3/WTpooled | 1.76247 | 0.362 |
IL12-4/WTpooled | 1.34451 | 0.516 |
IL1-4/WTpooled | 0.90834 | 0.834 |
WT/WTpooled | 0.92217 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17722 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08286 | 0.875 |
DC3000/delta hrp 6h | 1.04615 | 1 |
DC3000/delta hrp 12h | 1.01618 | 1 |
DC3000/delta hrp 24h | 0.99005 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.08297 | 0.355 |
DC3000 delta B/DC3000 delta AB | 1.07838 | 0.386 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.10589 | 1 |
Exp 36h | 1.0007 | 1 |
Exp 60h | 1.01502 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98658 | 1 |
Var 0h | 0.62863 | 1 |
Var 12h I row2-row1 | 1.1039 | 0.379 |
Var 12h NI row2-row1 | 0.92063 | 0.627 |
Var 36h I row2-row1 | 1.11824 | 0.489 |
Var 36h NI row2-row1 | 0.90817 | 0.584 |
Var 60h I row2-row1 | 0.95447 | 0.582 |
Var 60h NI row2-row1 | 0.99423 | 1 |
Time course 0hI-0hNI | 0.98889 | 0.988 |
Time course 12hI-12hNI | 1.05207 | 0.445 |
Time course 36hI-36hNI | 1.22342 | 0.005 |
Time course 60hI-60hNI | 1.3658 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05025 | 0.511 |
transgenic ySAMdc/azygous control (breaker) | 1.10589 | 0.166 |
transgenic ySAMdc/azygous control (red) | 0.90372 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 2.21104 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.84718 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.77878 | 1 |
Manapal/WT (break) | 0.77036 | 0.333 |
Manapal/WT (red) | 1.79923 | 0.142 |
|
|