Expression of 1-1-8.4.12.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.08650.878
27DAP/17DAP0.823140.551
39DAP/27DAP1.688280.1
41DAP/39DAP0.652370.081
42DAP/41DAP1.377510.802
43DAP/42DAP1.173231
47DAP/43DAP0.950770.779
52DAP/47DAP0.895750.695
57DAP/52DAP1.446360.859

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.635610.006
17DAP/reference1.314450.022
27DAP/reference1.149570.067
39DAP/reference1.247890.07
41DAP/reference1.387250.018
42DAP/reference1.894440.001
43DAP/reference1.342190.014
47DAP/reference1.52020.001
52DAP/reference1.189710.02
57DAP/reference1.127770.22

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.222460.04
27DAP/17DAP0.978040.854
39DAP/27DAP0.949950.572
41DAP/39DAP1.089680.807
42DAP/41DAP0.921330.374
43DAP/42DAP1.000941
47DAP/43DAP0.937680.577
52DAP/47DAP0.977830.905
57DAP/52DAP1.084850.657
57DAP/7DAP0.979351

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.155540.325
17DAP/reference1.109970.025
27DAP/reference1.022760.453
39DAP/reference1.032010.436
41DAP/reference1.067360.389
42DAP/reference1.098530.018
43DAP/reference1.021210.273
47DAP/reference1.449010.109
52DAP/reference1.008261
57DAP/reference1.061420.094

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.285990.144
17DAP/reference1.725680.008
27DAP/reference1.884590.013
39DAP/reference1.77570.015
41DAP/reference1.75670.006
42DAP/reference1.703340.022
43DAP/reference1.435970.078
47DAP/reference1.543420.029
52DAP/reference1.215960.017
57DAP/reference1.416070.008

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.023030.631
17DAP/reference1.169740.326
27DAP/reference1.060180.575
39DAP/reference1.072010.189
41DAP/reference1.061440.657
42DAP/reference1.379320.204
43DAP/reference1.740540.079
47DAP/reference1.426790.012
52DAP/reference1.208980.363
57DAP/reference1.722050.033

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.103030.966
26DAP/20DAP1.035841
34DAP/26DAP0.81060.381
51DAP/34DAP0.836810.428
52DAP/51DAP0.882681
53DAP/52DAP0.87270.64
55DAP/53DAP0.996460.886
57DAP/55DAP0.89020.556
62DAP/57DAP0.863420.466
68DAP/62DAP0.824470.543
68DAP/14DAP0.654710.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.441970.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.224060.059
Mature Green Tomato/Ripe Tomato1.362730.523
Immature Eggplant/Mature Eggplant1.205050.165
Ripe Pepper/Ripe Tomato0.883431
Mature Eggplant/Ripe Tomato2.488020.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.830830.56
1-1-2/M821.268391
12-2/M820.780950.862
12-4/M821.16131
1-3/M821.753630.277
2-1-1/M820.88696
2-1/M820.80450.74
2-6/M820.907351
3-2/M821.39588
4-1-1/M821.249191
4-1/M821.523840.853
4-3-2/M821.570740.253
4-3/M821.388680.268
5-3/M821.258710.496
6-2/M821.302210.253
6-3/M821.080991
7-1/M820.954790.476
7-2/M821.511590.324
9-3-2/M821.06084

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.030451
IL2-6/WTpooled0.917520.473
IL7-5/WTpooled1.587030.792
IL7-3/WTpooled1.009771
IL12-4/WTpooled0.719520.71
IL1-4/WTpooled0.952140.476
WT/WTpooled0.913821

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.741960.226

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.062310.875
DC3000/delta hrp 6h1.047681
DC3000/delta hrp 12h1.169061
DC3000/delta hrp 24h1.052550.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.696080.025
DC3000 delta B/DC3000 delta AB0.519210.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.906491
Exp 36h0.894310.589
Exp 60h1.057591

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.984411
Var 0h1.825940.782
Var 12h I row2-row10.791270.418
Var 12h NI row2-row11.034171
Var 36h I row2-row10.747950.805
Var 36h NI row2-row11.01351
Var 60h I row2-row11.351390.543
Var 60h NI row2-row10.970271
Time course 0hI-0hNI0.986780.973
Time course 12hI-12hNI1.00571
Time course 36hI-36hNI0.979170.569
Time course 60hI-60hNI0.510180.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.962530.377
transgenic ySAMdc/azygous control (breaker)0.981091
transgenic ySAMdc/azygous control (red)0.98371

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.166960.055

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.911020.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.897540.172
Manapal/WT (break)1.015951
Manapal/WT (red)1.328150.133