Expression of 1-1-8.4.12.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.880680.427
27DAP/17DAP0.83190.575
39DAP/27DAP1.029841
41DAP/39DAP2.994990.478
42DAP/41DAP1.115370.916
43DAP/42DAP1.002840.93
47DAP/43DAP0.868690.562
52DAP/47DAP1.319640.518
57DAP/52DAP0.905890.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.011550.743
17DAP/reference1.037910.874
27DAP/reference1.028690.904
39DAP/reference0.997960.797
41DAP/reference1.062010.667
42DAP/reference0.918130.202
43DAP/reference0.840060.259
47DAP/reference0.959870.445
52DAP/reference0.972450.515
57DAP/reference0.875850.235

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.92620.47
27DAP/17DAP0.982110.919
39DAP/27DAP1.098510.611
41DAP/39DAP0.978990.997
42DAP/41DAP1.03630.999
43DAP/42DAP1.087630.554
47DAP/43DAP1.05450.827
52DAP/47DAP1.015710.979
57DAP/52DAP0.982210.793
57DAP/7DAP1.192171

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.776010.071
17DAP/reference1.038581
27DAP/reference0.893330.146
39DAP/reference0.803730.015
41DAP/reference0.964510.489
42DAP/reference0.788260.048
43DAP/reference0.945570.23
47DAP/reference0.939670.671
52DAP/reference1.093650.352
57DAP/reference0.892080.114

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.708280.022
17DAP/reference1.200391
27DAP/reference0.813130.269
39DAP/reference0.813650.156
41DAP/reference0.766580.064
42DAP/reference1.01060.723
43DAP/reference1.099520.939
47DAP/reference1.084290.247
52DAP/reference0.999331
57DAP/reference1.103881

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.011251
17DAP/reference1.291280.084
27DAP/reference0.893820.195
39DAP/reference1.121820.264
41DAP/reference1.150050.796
42DAP/reference1.124260.775
43DAP/reference0.923630.365
47DAP/reference1.139790.405
52DAP/reference1.046280.657
57DAP/reference0.880750.326

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.705390.997
26DAP/20DAP1.054740.826
34DAP/26DAP0.976470.972
51DAP/34DAP1.316710.053
52DAP/51DAP0.683620.079
53DAP/52DAP2.00090.028
55DAP/53DAP1.017171
57DAP/55DAP0.922910.658
62DAP/57DAP0.531640.007
68DAP/62DAP0.829940.7
68DAP/14DAP1.809650.091

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.610470.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.0160.036
Mature Green Tomato/Ripe Tomato1.327470.036
Immature Eggplant/Mature Eggplant2.39841
Ripe Pepper/Ripe Tomato480.7510.258
Mature Eggplant/Ripe Tomato3.96134

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.95913
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.72991
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.99384
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.02173

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.54053
IL2-6/WTpooled0.725430.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.852590.418
IL12-4/WTpooled0.83070.71
IL1-4/WTpooled1.13731
WT/WTpooled0.991031

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.932691

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.049920.921
DC3000/delta hrp 6h0.429770.757
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.722690.037

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.934060.841
DC3000 delta B/DC3000 delta AB0.98821

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.417570.227
Exp 36h0.706180.699
Exp 60h0.9660.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.006441
Var 0h1.038091
Var 12h I row2-row10.960510.77
Var 12h NI row2-row10.910270.713
Var 36h I row2-row11.026010.742
Var 36h NI row2-row11.121440.482
Var 60h I row2-row11.273490.562
Var 60h NI row2-row11.031050.904
Time course 0hI-0hNI1.079040.413
Time course 12hI-12hNI0.984610.836
Time course 36hI-36hNI0.995020.718
Time course 60hI-60hNI0.86730.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.602320.046

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.67250.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.123861
Manapal/WT (red)N/AN/A