Expression of 1-1-8.4.12.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88068 | 0.427 |
27DAP/17DAP | 0.8319 | 0.575 |
39DAP/27DAP | 1.02984 | 1 |
41DAP/39DAP | 2.99499 | 0.478 |
42DAP/41DAP | 1.11537 | 0.916 |
43DAP/42DAP | 1.00284 | 0.93 |
47DAP/43DAP | 0.86869 | 0.562 |
52DAP/47DAP | 1.31964 | 0.518 |
57DAP/52DAP | 0.90589 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01155 | 0.743 |
17DAP/reference | 1.03791 | 0.874 |
27DAP/reference | 1.02869 | 0.904 |
39DAP/reference | 0.99796 | 0.797 |
41DAP/reference | 1.06201 | 0.667 |
42DAP/reference | 0.91813 | 0.202 |
43DAP/reference | 0.84006 | 0.259 |
47DAP/reference | 0.95987 | 0.445 |
52DAP/reference | 0.97245 | 0.515 |
57DAP/reference | 0.87585 | 0.235 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9262 | 0.47 |
27DAP/17DAP | 0.98211 | 0.919 |
39DAP/27DAP | 1.09851 | 0.611 |
41DAP/39DAP | 0.97899 | 0.997 |
42DAP/41DAP | 1.0363 | 0.999 |
43DAP/42DAP | 1.08763 | 0.554 |
47DAP/43DAP | 1.0545 | 0.827 |
52DAP/47DAP | 1.01571 | 0.979 |
57DAP/52DAP | 0.98221 | 0.793 |
57DAP/7DAP | 1.19217 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77601 | 0.071 |
17DAP/reference | 1.03858 | 1 |
27DAP/reference | 0.89333 | 0.146 |
39DAP/reference | 0.80373 | 0.015 |
41DAP/reference | 0.96451 | 0.489 |
42DAP/reference | 0.78826 | 0.048 |
43DAP/reference | 0.94557 | 0.23 |
47DAP/reference | 0.93967 | 0.671 |
52DAP/reference | 1.09365 | 0.352 |
57DAP/reference | 0.89208 | 0.114 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70828 | 0.022 |
17DAP/reference | 1.20039 | 1 |
27DAP/reference | 0.81313 | 0.269 |
39DAP/reference | 0.81365 | 0.156 |
41DAP/reference | 0.76658 | 0.064 |
42DAP/reference | 1.0106 | 0.723 |
43DAP/reference | 1.09952 | 0.939 |
47DAP/reference | 1.08429 | 0.247 |
52DAP/reference | 0.99933 | 1 |
57DAP/reference | 1.10388 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01125 | 1 |
17DAP/reference | 1.29128 | 0.084 |
27DAP/reference | 0.89382 | 0.195 |
39DAP/reference | 1.12182 | 0.264 |
41DAP/reference | 1.15005 | 0.796 |
42DAP/reference | 1.12426 | 0.775 |
43DAP/reference | 0.92363 | 0.365 |
47DAP/reference | 1.13979 | 0.405 |
52DAP/reference | 1.04628 | 0.657 |
57DAP/reference | 0.88075 | 0.326 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.70539 | 0.997 |
26DAP/20DAP | 1.05474 | 0.826 |
34DAP/26DAP | 0.97647 | 0.972 |
51DAP/34DAP | 1.31671 | 0.053 |
52DAP/51DAP | 0.68362 | 0.079 |
53DAP/52DAP | 2.0009 | 0.028 |
55DAP/53DAP | 1.01717 | 1 |
57DAP/55DAP | 0.92291 | 0.658 |
62DAP/57DAP | 0.53164 | 0.007 |
68DAP/62DAP | 0.82994 | 0.7 |
68DAP/14DAP | 1.80965 | 0.091 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.61047 | 0.031 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.016 | 0.036 |
Mature Green Tomato/Ripe Tomato | 1.32747 | 0.036 |
Immature Eggplant/Mature Eggplant | 2.39841 | |
Ripe Pepper/Ripe Tomato | 480.751 | 0.258 |
Mature Eggplant/Ripe Tomato | 3.96134 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.95913 | |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.72991 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.99384 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.02173 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.54053 | |
IL2-6/WTpooled | 0.72543 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.85259 | 0.418 |
IL12-4/WTpooled | 0.8307 | 0.71 |
IL1-4/WTpooled | 1.1373 | 1 |
WT/WTpooled | 0.99103 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.93269 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04992 | 0.921 |
DC3000/delta hrp 6h | 0.42977 | 0.757 |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 0.72269 | 0.037 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.93406 | 0.841 |
DC3000 delta B/DC3000 delta AB | 0.9882 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.41757 | 0.227 |
Exp 36h | 0.70618 | 0.699 |
Exp 60h | 0.966 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00644 | 1 |
Var 0h | 1.03809 | 1 |
Var 12h I row2-row1 | 0.96051 | 0.77 |
Var 12h NI row2-row1 | 0.91027 | 0.713 |
Var 36h I row2-row1 | 1.02601 | 0.742 |
Var 36h NI row2-row1 | 1.12144 | 0.482 |
Var 60h I row2-row1 | 1.27349 | 0.562 |
Var 60h NI row2-row1 | 1.03105 | 0.904 |
Time course 0hI-0hNI | 1.07904 | 0.413 |
Time course 12hI-12hNI | 0.98461 | 0.836 |
Time course 36hI-36hNI | 0.99502 | 0.718 |
Time course 60hI-60hNI | 0.8673 | 0.047 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.60232 | 0.046 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.6725 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.12386 | 1 |
Manapal/WT (red) | N/A | N/A |
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