Expression of 1-1-8.4.13.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18437 | 0.403 |
27DAP/17DAP | 1.27098 | 0.761 |
39DAP/27DAP | 1.03141 | 0.992 |
41DAP/39DAP | 1.12957 | 0.904 |
42DAP/41DAP | 0.75088 | 1 |
43DAP/42DAP | 1.30261 | 0.873 |
47DAP/43DAP | 5.0983 | 0.201 |
52DAP/47DAP | 2.70312 | 0.049 |
57DAP/52DAP | 1.18054 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73569 | 0.063 |
17DAP/reference | 0.75046 | 0.014 |
27DAP/reference | 0.80718 | 0.095 |
39DAP/reference | 0.78394 | 0.064 |
41DAP/reference | 0.71085 | 0.026 |
42DAP/reference | 0.81377 | 0.001 |
43DAP/reference | 0.87629 | 0.037 |
47DAP/reference | 2.12154 | 0.003 |
52DAP/reference | 2.34482 | 0.008 |
57DAP/reference | 1.74777 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91628 | 0.336 |
27DAP/17DAP | 1.03771 | 0.923 |
39DAP/27DAP | 1.02485 | 0.799 |
41DAP/39DAP | 1.15692 | 0.641 |
42DAP/41DAP | 0.84308 | 0.125 |
43DAP/42DAP | 1.19082 | 0.094 |
47DAP/43DAP | 0.99732 | 0.99 |
52DAP/47DAP | 1.75009 | 0.07 |
57DAP/52DAP | 2.64505 | 0.035 |
57DAP/7DAP | 2.2766 | 0.23 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96918 | 0.613 |
17DAP/reference | 0.98674 | 0.518 |
27DAP/reference | 0.87932 | 0.071 |
39DAP/reference | 0.72396 | 0.011 |
41DAP/reference | 0.80542 | 0.018 |
42DAP/reference | 0.90357 | 0.248 |
43DAP/reference | 0.81744 | 0.023 |
47DAP/reference | 0.80622 | 0.128 |
52DAP/reference | 0.63432 | 0.013 |
57DAP/reference | 0.89587 | 0.176 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.61481 | 0.008 |
17DAP/reference | 0.72142 | 0.006 |
27DAP/reference | 0.71127 | 0.01 |
39DAP/reference | 0.64531 | 0.016 |
41DAP/reference | 0.75732 | 0.029 |
42DAP/reference | 0.79471 | 0.024 |
43DAP/reference | 0.73287 | 0.017 |
47DAP/reference | 0.8003 | 0.017 |
52DAP/reference | 0.66105 | 0.004 |
57DAP/reference | 0.58646 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87828 | 0.119 |
17DAP/reference | 0.87649 | 0.281 |
27DAP/reference | 0.85022 | 0.048 |
39DAP/reference | 0.81829 | 0.029 |
41DAP/reference | 0.61573 | 0.014 |
42DAP/reference | 0.73486 | 0.041 |
43DAP/reference | 0.76936 | 0.034 |
47DAP/reference | 0.93611 | 0.348 |
52DAP/reference | 2.3308 | 0.034 |
57DAP/reference | 2.36584 | 0.007 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.37951 | 0.916 |
26DAP/20DAP | 0.7175 | 0.317 |
34DAP/26DAP | 1.38101 | 0.819 |
51DAP/34DAP | 0.91316 | 0.631 |
52DAP/51DAP | 0.95119 | 1 |
53DAP/52DAP | 0.9355 | 0.776 |
55DAP/53DAP | 0.96647 | 0.725 |
57DAP/55DAP | 0.99646 | 0.904 |
62DAP/57DAP | 1.13384 | 0.622 |
68DAP/62DAP | 0.76576 | 0.579 |
68DAP/14DAP | 0.80217 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.35604 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.04977 | 0.015 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.1298 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.05721 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04045 | 1 |
1-1-2/M82 | 1.00981 | 1 |
12-2/M82 | 0.82418 | 0.639 |
12-4/M82 | 0.92379 | |
1-3/M82 | 1.67942 | 0.26 |
2-1-1/M82 | 1.26259 | 0.764 |
2-1/M82 | 0.93679 | 0.74 |
2-6/M82 | 1.2962 | 0.452 |
3-2/M82 | 1.09869 | 0.967 |
4-1-1/M82 | 1.78329 | 0.968 |
4-1/M82 | 1.04156 | |
4-3-2/M82 | 1.83856 | 0.508 |
4-3/M82 | 1.4745 | 0.268 |
5-3/M82 | 1.01815 | 1 |
6-2/M82 | 0.84166 | 1 |
6-3/M82 | 1.09087 | 1 |
7-1/M82 | 1.37513 | 0.925 |
7-2/M82 | 1.09445 | 1 |
9-3-2/M82 | 2.25807 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.86198 | |
IL2-6/WTpooled | 1.03434 | 0.788 |
IL7-5/WTpooled | 0.53743 | 1 |
IL7-3/WTpooled | 0.84659 | 0.418 |
IL12-4/WTpooled | 0.84308 | 0.71 |
IL1-4/WTpooled | 1.31866 | 1 |
WT/WTpooled | 1.06465 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.89913 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.12813 | 0.914 |
DC3000/delta hrp 6h | 0.90407 | |
DC3000/delta hrp 12h | 1.05026 | 1 |
DC3000/delta hrp 24h | 1.30621 | 0.123 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.76259 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.07651 | 1 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04989 | 1 |
Var 0h | 0.95515 | 1 |
Var 12h I row2-row1 | 1.16974 | 0.443 |
Var 12h NI row2-row1 | 18.3559 | |
Var 36h I row2-row1 | 1.12168 | 0.601 |
Var 36h NI row2-row1 | 1.02445 | |
Var 60h I row2-row1 | 1.17995 | 0.543 |
Var 60h NI row2-row1 | 1.00522 | 1 |
Time course 0hI-0hNI | 1.12369 | 1 |
Time course 12hI-12hNI | 0.85994 | 0.329 |
Time course 36hI-36hNI | 0.89572 | 0.284 |
Time course 60hI-60hNI | 6.27148 | 0.302 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.88773 | 0.289 |
transgenic ySAMdc/azygous control (breaker) | 0.88808 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.70186 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99937 | 0.94 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.76991 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.48914 | 0.083 |
Manapal/WT (break) | 1.28349 | 1 |
Manapal/WT (red) | 1.23408 | 0.15 |
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