Expression of 1-1-8.4.13.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.184370.403
27DAP/17DAP1.270980.761
39DAP/27DAP1.031410.992
41DAP/39DAP1.129570.904
42DAP/41DAP0.750881
43DAP/42DAP1.302610.873
47DAP/43DAP5.09830.201
52DAP/47DAP2.703120.049
57DAP/52DAP1.180540.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.735690.063
17DAP/reference0.750460.014
27DAP/reference0.807180.095
39DAP/reference0.783940.064
41DAP/reference0.710850.026
42DAP/reference0.813770.001
43DAP/reference0.876290.037
47DAP/reference2.121540.003
52DAP/reference2.344820.008
57DAP/reference1.747770.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.916280.336
27DAP/17DAP1.037710.923
39DAP/27DAP1.024850.799
41DAP/39DAP1.156920.641
42DAP/41DAP0.843080.125
43DAP/42DAP1.190820.094
47DAP/43DAP0.997320.99
52DAP/47DAP1.750090.07
57DAP/52DAP2.645050.035
57DAP/7DAP2.27660.23

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.969180.613
17DAP/reference0.986740.518
27DAP/reference0.879320.071
39DAP/reference0.723960.011
41DAP/reference0.805420.018
42DAP/reference0.903570.248
43DAP/reference0.817440.023
47DAP/reference0.806220.128
52DAP/reference0.634320.013
57DAP/reference0.895870.176

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.614810.008
17DAP/reference0.721420.006
27DAP/reference0.711270.01
39DAP/reference0.645310.016
41DAP/reference0.757320.029
42DAP/reference0.794710.024
43DAP/reference0.732870.017
47DAP/reference0.80030.017
52DAP/reference0.661050.004
57DAP/reference0.586460.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.878280.119
17DAP/reference0.876490.281
27DAP/reference0.850220.048
39DAP/reference0.818290.029
41DAP/reference0.615730.014
42DAP/reference0.734860.041
43DAP/reference0.769360.034
47DAP/reference0.936110.348
52DAP/reference2.33080.034
57DAP/reference2.365840.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.379510.916
26DAP/20DAP0.71750.317
34DAP/26DAP1.381010.819
51DAP/34DAP0.913160.631
52DAP/51DAP0.951191
53DAP/52DAP0.93550.776
55DAP/53DAP0.966470.725
57DAP/55DAP0.996460.904
62DAP/57DAP1.133840.622
68DAP/62DAP0.765760.579
68DAP/14DAP0.802170.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.356040.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.049770.015
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.12980.224
Mature Eggplant/Ripe Tomato0.057210.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.040451
1-1-2/M821.009811
12-2/M820.824180.639
12-4/M820.92379
1-3/M821.679420.26
2-1-1/M821.262590.764
2-1/M820.936790.74
2-6/M821.29620.452
3-2/M821.098690.967
4-1-1/M821.783290.968
4-1/M821.04156
4-3-2/M821.838560.508
4-3/M821.47450.268
5-3/M821.018151
6-2/M820.841661
6-3/M821.090871
7-1/M821.375130.925
7-2/M821.094451
9-3-2/M822.25807

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.86198
IL2-6/WTpooled1.034340.788
IL7-5/WTpooled0.537431
IL7-3/WTpooled0.846590.418
IL12-4/WTpooled0.843080.71
IL1-4/WTpooled1.318661
WT/WTpooled1.064651

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.899130.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.128130.914
DC3000/delta hrp 6h0.90407
DC3000/delta hrp 12h1.050261
DC3000/delta hrp 24h1.306210.123

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.76259
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.076511
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.049891
Var 0h0.955151
Var 12h I row2-row11.169740.443
Var 12h NI row2-row118.3559
Var 36h I row2-row11.121680.601
Var 36h NI row2-row11.02445
Var 60h I row2-row11.179950.543
Var 60h NI row2-row11.005221
Time course 0hI-0hNI1.123691
Time course 12hI-12hNI0.859940.329
Time course 36hI-36hNI0.895720.284
Time course 60hI-60hNI6.271480.302

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.887730.289
transgenic ySAMdc/azygous control (breaker)0.888080.49
transgenic ySAMdc/azygous control (red)0.701861

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.999370.94

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.769910.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.489140.083
Manapal/WT (break)1.283491
Manapal/WT (red)1.234080.15