Expression of 1-1-8.4.14.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.030920.911
27DAP/17DAP1.171660.89
39DAP/27DAP1.400880.135
41DAP/39DAP0.613260.047
42DAP/41DAP1.181621
43DAP/42DAP1.143191
47DAP/43DAP0.944950.773
52DAP/47DAP0.889070.683
57DAP/52DAP1.440280.817

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.635920.008
17DAP/reference1.351320.089
27DAP/reference1.108920.232
39DAP/reference1.277590.256
41DAP/reference1.235140.079
42DAP/reference1.881690.001
43DAP/reference1.417770.008
47DAP/reference1.298530.014
52DAP/reference0.911150.23
57DAP/reference1.089810.18

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.116520.161
27DAP/17DAP0.969660.878
39DAP/27DAP0.993181
41DAP/39DAP1.126290.59
42DAP/41DAP0.925740.469
43DAP/42DAP0.916690.383
47DAP/43DAP1.103740.593
52DAP/47DAP0.945050.753
57DAP/52DAP1.059060.688
57DAP/7DAP0.974911

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.386330.031
17DAP/reference1.425380.006
27DAP/reference1.481390.007
39DAP/reference1.465010.007
41DAP/reference1.420660.009
42DAP/reference1.33180.018
43DAP/reference1.123160.111
47DAP/reference1.358620.027
52DAP/reference1.486760.017
57DAP/reference1.545580.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.316440.049
17DAP/reference1.409680.007
27DAP/reference1.902770.022
39DAP/reference1.621950.051
41DAP/reference1.51410.02
42DAP/reference1.63020.008
43DAP/reference1.324370.185
47DAP/reference1.82040.014
52DAP/reference1.140970.471
57DAP/reference0.979620.61

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.219020.024
17DAP/reference1.057040.689
27DAP/reference1.166440.062
39DAP/reference1.253290.01
41DAP/reference1.177810.02
42DAP/reference1.312220.041
43DAP/reference1.673770.021
47DAP/reference1.174470.127
52DAP/reference1.217870.252
57DAP/reference1.233480.223

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.118730.966
26DAP/20DAP1.053080.988
34DAP/26DAP0.682710.319
51DAP/34DAP0.563890.06
52DAP/51DAP0.926021
53DAP/52DAP1.003660.99
55DAP/53DAP0.946290.725
57DAP/55DAP0.960480.817
62DAP/57DAP0.94360.871
68DAP/62DAP0.92641
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.319780.039

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.262220.058
Mature Green Tomato/Ripe Tomato1.097530.814
Immature Eggplant/Mature Eggplant1.17010.222
Ripe Pepper/Ripe Tomato0.950031
Mature Eggplant/Ripe Tomato2.565240.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.832910.651
1-1-2/M821.220791
12-2/M820.610040.678
12-4/M820.72037
1-3/M821.802410.255
2-1-1/M820.89177
2-1/M820.725510.345
2-6/M821.001141
3-2/M821.344310.402
4-1-1/M821.545641
4-1/M821.618391
4-3-2/M821.375430.246
4-3/M821.521530.268
5-3/M821.258810.572
6-2/M821.43380.253
6-3/M821.047071
7-1/M821.063551
7-2/M821.262110.318
9-3-2/M821.255471

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.085710.277
IL2-6/WTpooled0.878430.473
IL7-5/WTpooled1.361030.75
IL7-3/WTpooled1.037461
IL12-4/WTpooled1.107910.891
IL1-4/WTpooled1.022651
WT/WTpooled0.976141

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.049491

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.114770.715
DC3000/delta hrp 6h0.938550.95
DC3000/delta hrp 12h0.887071
DC3000/delta hrp 24h1.052040.69

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.666560.029
DC3000 delta B/DC3000 delta AB0.628080.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.877361
Exp 36h0.969270.943
Exp 60h1.027541

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.025891
Var 0h0.678750.933
Var 12h I row2-row10.85970.31
Var 12h NI row2-row11.078311
Var 36h I row2-row11.105170.742
Var 36h NI row2-row10.977350.852
Var 60h I row2-row10.992721
Var 60h NI row2-row10.924280.866
Time course 0hI-0hNI0.961350.765
Time course 12hI-12hNI1.002911
Time course 36hI-36hNI1.06290.513
Time course 60hI-60hNI0.452930.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.919380.315
transgenic ySAMdc/azygous control (breaker)1.45030.172
transgenic ySAMdc/azygous control (red)1.141310.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.204170.047

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.814710.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.890491
Manapal/WT (break)0.912851
Manapal/WT (red)1.218360.222