Expression of 1-1-8.4.14.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.556380.08
27DAP/17DAP0.620650.049
39DAP/27DAP0.49560.255
41DAP/39DAP0.868880.459
42DAP/41DAP1.050080.986
43DAP/42DAP1.697660.047
47DAP/43DAP1.056820.856
52DAP/47DAP0.820740.574
57DAP/52DAP0.608080.622

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.341430.006
17DAP/reference1.27980.019
27DAP/reference0.947750.406
39DAP/reference1.101870.679
41DAP/reference0.862390.039
42DAP/reference1.19410.029
43DAP/reference1.056890.617
47DAP/reference0.826670.023
52DAP/reference0.835340.118
57DAP/reference0.887430.147

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.650920.075
27DAP/17DAP0.813240.158
39DAP/27DAP0.544310.031
41DAP/39DAP0.827120.201
42DAP/41DAP0.898030.362
43DAP/42DAP1.073210.664
47DAP/43DAP0.879980.259
52DAP/47DAP1.223170.512
57DAP/52DAP1.008250.875
57DAP/7DAP0.871861

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.842520.03
17DAP/reference1.12430.084
27DAP/reference0.851750.051
39DAP/reference0.836740.039
41DAP/reference0.76230.043
42DAP/reference0.664680.01
43DAP/reference0.752290.014
47DAP/reference0.789690.066
52DAP/reference0.701660.011
57DAP/reference0.885390.077

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.784430.078
17DAP/reference1.589550.011
27DAP/reference1.143980.437
39DAP/reference0.77480.089
41DAP/reference0.868140.11
42DAP/reference0.821150.121
43DAP/reference0.761170.012
47DAP/reference0.819880.083
52DAP/reference0.687030.004
57DAP/reference0.748930.043

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.712390.015
17DAP/reference2.01460.031
27DAP/reference1.198060.447
39DAP/reference0.915750.101
41DAP/reference0.868780.077
42DAP/reference1.294720.114
43DAP/reference1.574810.074
47DAP/reference2.144660.005
52DAP/reference1.074860.77
57DAP/reference2.099670.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.169690.916
26DAP/20DAP0.883260.512
34DAP/26DAP1.396310.819
51DAP/34DAP1.159420.692
52DAP/51DAP1.21540.492
53DAP/52DAP1.350220.149
55DAP/53DAP0.945590.735
57DAP/55DAP1.021090.944
62DAP/57DAP1.112510.8
68DAP/62DAP0.796190.543
68DAP/14DAP1.122330.785

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.714810.14

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.817530.295
Mature Green Tomato/Ripe Tomato4.611410.015
Immature Eggplant/Mature Eggplant0.378680.057
Ripe Pepper/Ripe Tomato6.78764
Mature Eggplant/Ripe Tomato3.92712

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.59776
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.36769
7-2/M82N/AN/A
9-3-2/M822.0984

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.05096
IL2-6/WTpooled0.95231
IL7-5/WTpooled1.09588
IL7-3/WTpooled1.246521
IL12-4/WTpooled1.462150.595
IL1-4/WTpooled1.125161
WT/WTpooled1.156531

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.927290.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h1.015051
DC3000/delta hrp 12h1.477661
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.469060.023
DC3000 delta B/DC3000 delta AB0.363390.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.007641
Exp 36h0.657760.434
Exp 60h0.508780.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.976691
Var 0h0.956731
Var 12h I row2-row10.744450.565
Var 12h NI row2-row11.108281
Var 36h I row2-row10.938051
Var 36h NI row2-row11.077441
Var 60h I row2-row11.226470.523
Var 60h NI row2-row10.943171
Time course 0hI-0hNI1.033750.852
Time course 12hI-12hNI0.942710.628
Time course 36hI-36hNI0.808510.043
Time course 60hI-60hNI0.124820.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.895380.291
transgenic ySAMdc/azygous control (breaker)1.292030.248
transgenic ySAMdc/azygous control (red)6.861020.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.757990.092

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.345220.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)4.217110.087
Manapal/WT (break)6.087420.14
Manapal/WT (red)2.765761