Expression of 1-1-8.4.14.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.55638 | 0.08 |
27DAP/17DAP | 0.62065 | 0.049 |
39DAP/27DAP | 0.4956 | 0.255 |
41DAP/39DAP | 0.86888 | 0.459 |
42DAP/41DAP | 1.05008 | 0.986 |
43DAP/42DAP | 1.69766 | 0.047 |
47DAP/43DAP | 1.05682 | 0.856 |
52DAP/47DAP | 0.82074 | 0.574 |
57DAP/52DAP | 0.60808 | 0.622 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.34143 | 0.006 |
17DAP/reference | 1.2798 | 0.019 |
27DAP/reference | 0.94775 | 0.406 |
39DAP/reference | 1.10187 | 0.679 |
41DAP/reference | 0.86239 | 0.039 |
42DAP/reference | 1.1941 | 0.029 |
43DAP/reference | 1.05689 | 0.617 |
47DAP/reference | 0.82667 | 0.023 |
52DAP/reference | 0.83534 | 0.118 |
57DAP/reference | 0.88743 | 0.147 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.65092 | 0.075 |
27DAP/17DAP | 0.81324 | 0.158 |
39DAP/27DAP | 0.54431 | 0.031 |
41DAP/39DAP | 0.82712 | 0.201 |
42DAP/41DAP | 0.89803 | 0.362 |
43DAP/42DAP | 1.07321 | 0.664 |
47DAP/43DAP | 0.87998 | 0.259 |
52DAP/47DAP | 1.22317 | 0.512 |
57DAP/52DAP | 1.00825 | 0.875 |
57DAP/7DAP | 0.87186 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.84252 | 0.03 |
17DAP/reference | 1.1243 | 0.084 |
27DAP/reference | 0.85175 | 0.051 |
39DAP/reference | 0.83674 | 0.039 |
41DAP/reference | 0.7623 | 0.043 |
42DAP/reference | 0.66468 | 0.01 |
43DAP/reference | 0.75229 | 0.014 |
47DAP/reference | 0.78969 | 0.066 |
52DAP/reference | 0.70166 | 0.011 |
57DAP/reference | 0.88539 | 0.077 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.78443 | 0.078 |
17DAP/reference | 1.58955 | 0.011 |
27DAP/reference | 1.14398 | 0.437 |
39DAP/reference | 0.7748 | 0.089 |
41DAP/reference | 0.86814 | 0.11 |
42DAP/reference | 0.82115 | 0.121 |
43DAP/reference | 0.76117 | 0.012 |
47DAP/reference | 0.81988 | 0.083 |
52DAP/reference | 0.68703 | 0.004 |
57DAP/reference | 0.74893 | 0.043 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.71239 | 0.015 |
17DAP/reference | 2.0146 | 0.031 |
27DAP/reference | 1.19806 | 0.447 |
39DAP/reference | 0.91575 | 0.101 |
41DAP/reference | 0.86878 | 0.077 |
42DAP/reference | 1.29472 | 0.114 |
43DAP/reference | 1.57481 | 0.074 |
47DAP/reference | 2.14466 | 0.005 |
52DAP/reference | 1.07486 | 0.77 |
57DAP/reference | 2.09967 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16969 | 0.916 |
26DAP/20DAP | 0.88326 | 0.512 |
34DAP/26DAP | 1.39631 | 0.819 |
51DAP/34DAP | 1.15942 | 0.692 |
52DAP/51DAP | 1.2154 | 0.492 |
53DAP/52DAP | 1.35022 | 0.149 |
55DAP/53DAP | 0.94559 | 0.735 |
57DAP/55DAP | 1.02109 | 0.944 |
62DAP/57DAP | 1.11251 | 0.8 |
68DAP/62DAP | 0.79619 | 0.543 |
68DAP/14DAP | 1.12233 | 0.785 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.71481 | 0.14 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.81753 | 0.295 |
Mature Green Tomato/Ripe Tomato | 4.61141 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.37868 | 0.057 |
Ripe Pepper/Ripe Tomato | 6.78764 | |
Mature Eggplant/Ripe Tomato | 3.92712 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.59776 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.36769 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 2.0984 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.05096 | |
IL2-6/WTpooled | 0.9523 | 1 |
IL7-5/WTpooled | 1.09588 | |
IL7-3/WTpooled | 1.24652 | 1 |
IL12-4/WTpooled | 1.46215 | 0.595 |
IL1-4/WTpooled | 1.12516 | 1 |
WT/WTpooled | 1.15653 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.92729 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 1.01505 | 1 |
DC3000/delta hrp 12h | 1.47766 | 1 |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.46906 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.36339 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00764 | 1 |
Exp 36h | 0.65776 | 0.434 |
Exp 60h | 0.50878 | 0.29 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97669 | 1 |
Var 0h | 0.95673 | 1 |
Var 12h I row2-row1 | 0.74445 | 0.565 |
Var 12h NI row2-row1 | 1.10828 | 1 |
Var 36h I row2-row1 | 0.93805 | 1 |
Var 36h NI row2-row1 | 1.07744 | 1 |
Var 60h I row2-row1 | 1.22647 | 0.523 |
Var 60h NI row2-row1 | 0.94317 | 1 |
Time course 0hI-0hNI | 1.03375 | 0.852 |
Time course 12hI-12hNI | 0.94271 | 0.628 |
Time course 36hI-36hNI | 0.80851 | 0.043 |
Time course 60hI-60hNI | 0.12482 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89538 | 0.291 |
transgenic ySAMdc/azygous control (breaker) | 1.29203 | 0.248 |
transgenic ySAMdc/azygous control (red) | 6.86102 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.75799 | 0.092 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.34522 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 4.21711 | 0.087 |
Manapal/WT (break) | 6.08742 | 0.14 |
Manapal/WT (red) | 2.76576 | 1 |
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