Expression of 1-1-8.4.14.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.25732 | 0.138 |
27DAP/17DAP | 1.21954 | 0.761 |
39DAP/27DAP | 1.17324 | 0.593 |
41DAP/39DAP | 0.69416 | 0.087 |
42DAP/41DAP | 1.06263 | 0.938 |
43DAP/42DAP | 1.01946 | 1 |
47DAP/43DAP | 1.27585 | 0.459 |
52DAP/47DAP | 1.05466 | 0.918 |
57DAP/52DAP | 1.1925 | 0.952 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02153 | 0.814 |
17DAP/reference | 1.06389 | 0.258 |
27DAP/reference | 1.12042 | 0.069 |
39DAP/reference | 0.99417 | 0.921 |
41DAP/reference | 1.02635 | 0.624 |
42DAP/reference | 1.03123 | 0.585 |
43DAP/reference | 1.04819 | 0.518 |
47DAP/reference | 1.11202 | 0.04 |
52DAP/reference | 1.05898 | 0.548 |
57DAP/reference | 1.0043 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07151 | 0.247 |
27DAP/17DAP | 1.00993 | 0.98 |
39DAP/27DAP | 1.00678 | 0.854 |
41DAP/39DAP | 0.93369 | 0.781 |
42DAP/41DAP | 1.05771 | 0.763 |
43DAP/42DAP | 0.89647 | 0.049 |
47DAP/43DAP | 0.99399 | 0.985 |
52DAP/47DAP | 1.07481 | 0.71 |
57DAP/52DAP | 1.04214 | 0.768 |
57DAP/7DAP | 1.11693 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97995 | 0.495 |
17DAP/reference | 1.05144 | 0.022 |
27DAP/reference | 1.13314 | 0.018 |
39DAP/reference | 1.06569 | 0.012 |
41DAP/reference | 1.06964 | 0.314 |
42DAP/reference | 1.02125 | 0.686 |
43DAP/reference | 1.03597 | 0.537 |
47DAP/reference | 1.13112 | 0.047 |
52DAP/reference | 1.06624 | 0.428 |
57DAP/reference | 1.11338 | 0.033 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94045 | 0.306 |
17DAP/reference | 1.13325 | 0.089 |
27DAP/reference | 1.09576 | 0.388 |
39DAP/reference | 1.09696 | 0.281 |
41DAP/reference | 1.05872 | 0.491 |
42DAP/reference | 1.05876 | 0.509 |
43DAP/reference | 1.0833 | 0.239 |
47DAP/reference | 0.97126 | 0.349 |
52DAP/reference | 1.10885 | 0.038 |
57DAP/reference | 1.02843 | 0.98 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00931 | 0.918 |
17DAP/reference | 1.03414 | 0.602 |
27DAP/reference | 1.05452 | 0.171 |
39DAP/reference | 1.05193 | 0.189 |
41DAP/reference | 1.03063 | 0.471 |
42DAP/reference | 1.04371 | 0.521 |
43DAP/reference | 1.04762 | 0.459 |
47DAP/reference | 1.11965 | 0.093 |
52DAP/reference | 1.21301 | 0.09 |
57DAP/reference | 1.2867 | 0.031 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00929 | 1 |
26DAP/20DAP | 1.12109 | 0.518 |
34DAP/26DAP | 0.98921 | 1 |
51DAP/34DAP | 1.05248 | 0.759 |
52DAP/51DAP | 0.99509 | 1 |
53DAP/52DAP | 0.94526 | 0.695 |
55DAP/53DAP | 0.93013 | 0.619 |
57DAP/55DAP | 0.95416 | 0.812 |
62DAP/57DAP | 1.04815 | 0.902 |
68DAP/62DAP | 1.28173 | 0.431 |
68DAP/14DAP | 1.381 | 0.026 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.899 | 0.145 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.14173 | 0.089 |
Mature Green Tomato/Ripe Tomato | 1.09387 | 0.69 |
Immature Eggplant/Mature Eggplant | 0.97024 | 0.72 |
Ripe Pepper/Ripe Tomato | 0.82133 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.05099 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0156 | 1 |
1-1-2/M82 | 0.93811 | 1 |
12-2/M82 | 0.99927 | 1 |
12-4/M82 | 1.04755 | 1 |
1-3/M82 | 1.11492 | 1 |
2-1-1/M82 | 0.79388 | 0.465 |
2-1/M82 | 0.99945 | 1 |
2-6/M82 | 0.97453 | 1 |
3-2/M82 | 0.99029 | 1 |
4-1-1/M82 | 1.05324 | 1 |
4-1/M82 | 1.13632 | 1 |
4-3-2/M82 | 1.12585 | 0.508 |
4-3/M82 | 0.9532 | 0.72 |
5-3/M82 | 0.97865 | 0.642 |
6-2/M82 | 0.95503 | 1 |
6-3/M82 | 1.03414 | 1 |
7-1/M82 | 1.03765 | 1 |
7-2/M82 | 0.9694 | 0.881 |
9-3-2/M82 | 1.1397 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.77688 | 0.243 |
IL2-6/WTpooled | 1.06888 | 0.584 |
IL7-5/WTpooled | 0.77379 | 1 |
IL7-3/WTpooled | 0.8069 | 0.294 |
IL12-4/WTpooled | 0.92185 | 1 |
IL1-4/WTpooled | 1.29668 | 1 |
WT/WTpooled | 0.98958 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97628 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.12016 | 0.846 |
DC3000/delta hrp 6h | 1.12852 | 1 |
DC3000/delta hrp 12h | 0.90508 | 1 |
DC3000/delta hrp 24h | 1.01166 | 0.76 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.15308 | 0.045 |
DC3000 delta B/DC3000 delta AB | 1.14123 | 0.274 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.20166 | 1 |
Exp 36h | 1.20413 | 0.693 |
Exp 60h | 1.34605 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02482 | 1 |
Var 0h | 0.94737 | 1 |
Var 12h I row2-row1 | 1.03985 | 0.795 |
Var 12h NI row2-row1 | 1.0026 | 1 |
Var 36h I row2-row1 | 1.10226 | 1 |
Var 36h NI row2-row1 | 0.88639 | 0.584 |
Var 60h I row2-row1 | 1.00913 | 1 |
Var 60h NI row2-row1 | 1.04235 | 1 |
Time course 0hI-0hNI | 1.07352 | 0.662 |
Time course 12hI-12hNI | 1.02221 | 0.818 |
Time course 36hI-36hNI | 1.14442 | 0.07 |
Time course 60hI-60hNI | 1.8564 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92158 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 0.86726 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.87801 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01785 | 0.656 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.15056 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.91789 | 1 |
Manapal/WT (break) | 0.92074 | 1 |
Manapal/WT (red) | 1.04276 | 1 |
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