Expression of 1-1-8.4.14.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.257320.138
27DAP/17DAP1.219540.761
39DAP/27DAP1.173240.593
41DAP/39DAP0.694160.087
42DAP/41DAP1.062630.938
43DAP/42DAP1.019461
47DAP/43DAP1.275850.459
52DAP/47DAP1.054660.918
57DAP/52DAP1.19250.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.021530.814
17DAP/reference1.063890.258
27DAP/reference1.120420.069
39DAP/reference0.994170.921
41DAP/reference1.026350.624
42DAP/reference1.031230.585
43DAP/reference1.048190.518
47DAP/reference1.112020.04
52DAP/reference1.058980.548
57DAP/reference1.00431

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.071510.247
27DAP/17DAP1.009930.98
39DAP/27DAP1.006780.854
41DAP/39DAP0.933690.781
42DAP/41DAP1.057710.763
43DAP/42DAP0.896470.049
47DAP/43DAP0.993990.985
52DAP/47DAP1.074810.71
57DAP/52DAP1.042140.768
57DAP/7DAP1.116931

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.979950.495
17DAP/reference1.051440.022
27DAP/reference1.133140.018
39DAP/reference1.065690.012
41DAP/reference1.069640.314
42DAP/reference1.021250.686
43DAP/reference1.035970.537
47DAP/reference1.131120.047
52DAP/reference1.066240.428
57DAP/reference1.113380.033

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.940450.306
17DAP/reference1.133250.089
27DAP/reference1.095760.388
39DAP/reference1.096960.281
41DAP/reference1.058720.491
42DAP/reference1.058760.509
43DAP/reference1.08330.239
47DAP/reference0.971260.349
52DAP/reference1.108850.038
57DAP/reference1.028430.98

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.009310.918
17DAP/reference1.034140.602
27DAP/reference1.054520.171
39DAP/reference1.051930.189
41DAP/reference1.030630.471
42DAP/reference1.043710.521
43DAP/reference1.047620.459
47DAP/reference1.119650.093
52DAP/reference1.213010.09
57DAP/reference1.28670.031

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.009291
26DAP/20DAP1.121090.518
34DAP/26DAP0.989211
51DAP/34DAP1.052480.759
52DAP/51DAP0.995091
53DAP/52DAP0.945260.695
55DAP/53DAP0.930130.619
57DAP/55DAP0.954160.812
62DAP/57DAP1.048150.902
68DAP/62DAP1.281730.431
68DAP/14DAP1.3810.026

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.8990.145

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.141730.089
Mature Green Tomato/Ripe Tomato1.093870.69
Immature Eggplant/Mature Eggplant0.970240.72
Ripe Pepper/Ripe Tomato0.821330.293
Mature Eggplant/Ripe Tomato1.050991

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.01561
1-1-2/M820.938111
12-2/M820.999271
12-4/M821.047551
1-3/M821.114921
2-1-1/M820.793880.465
2-1/M820.999451
2-6/M820.974531
3-2/M820.990291
4-1-1/M821.053241
4-1/M821.136321
4-3-2/M821.125850.508
4-3/M820.95320.72
5-3/M820.978650.642
6-2/M820.955031
6-3/M821.034141
7-1/M821.037651
7-2/M820.96940.881
9-3-2/M821.13971

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.776880.243
IL2-6/WTpooled1.068880.584
IL7-5/WTpooled0.773791
IL7-3/WTpooled0.80690.294
IL12-4/WTpooled0.921851
IL1-4/WTpooled1.296681
WT/WTpooled0.989581

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.976281

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.120160.846
DC3000/delta hrp 6h1.128521
DC3000/delta hrp 12h0.905081
DC3000/delta hrp 24h1.011660.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.153080.045
DC3000 delta B/DC3000 delta AB1.141230.274

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.201661
Exp 36h1.204130.693
Exp 60h1.346050.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.024821
Var 0h0.947371
Var 12h I row2-row11.039850.795
Var 12h NI row2-row11.00261
Var 36h I row2-row11.102261
Var 36h NI row2-row10.886390.584
Var 60h I row2-row11.009131
Var 60h NI row2-row11.042351
Time course 0hI-0hNI1.073520.662
Time course 12hI-12hNI1.022210.818
Time course 36hI-36hNI1.144420.07
Time course 60hI-60hNI1.85640.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.921580.529
transgenic ySAMdc/azygous control (breaker)0.867260.49
transgenic ySAMdc/azygous control (red)0.878011

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.017850.656

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.150561

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.917891
Manapal/WT (break)0.920741
Manapal/WT (red)1.042761