Expression of 1-1-8.4.15.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 3.24676 | 0.76 |
27DAP/17DAP | 3.69267 | 0.945 |
39DAP/27DAP | 1.92843 | 1 |
41DAP/39DAP | 2.08628 | 0.914 |
42DAP/41DAP | 0.7026 | 1 |
43DAP/42DAP | 1.19329 | 1 |
47DAP/43DAP | 1.80412 | 0.442 |
52DAP/47DAP | 0.89267 | 0.752 |
57DAP/52DAP | 0.65625 | 0.601 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07796 | 1 |
17DAP/reference | 0.83225 | 0.169 |
27DAP/reference | 0.83451 | 0.265 |
39DAP/reference | 0.60102 | 0.022 |
41DAP/reference | 0.50368 | 0.01 |
42DAP/reference | 0.77691 | 0.006 |
43DAP/reference | 0.64821 | 0.017 |
47DAP/reference | 0.68803 | 0.001 |
52DAP/reference | 0.48522 | 0.014 |
57DAP/reference | 0.77555 | 0.031 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1855 | 1 |
27DAP/17DAP | 0.87183 | 0.724 |
39DAP/27DAP | 0.51377 | 0.036 |
41DAP/39DAP | 1.72001 | 0.801 |
42DAP/41DAP | 1.01397 | 0.77 |
43DAP/42DAP | 0.72261 | 0.051 |
47DAP/43DAP | 0.90996 | 0.516 |
52DAP/47DAP | 1.03878 | 0.975 |
57DAP/52DAP | 0.84708 | 0.317 |
57DAP/7DAP | 0.21418 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17719 | 0.119 |
17DAP/reference | 1.08375 | 0.077 |
27DAP/reference | 0.99058 | 0.494 |
39DAP/reference | 0.93691 | 0.073 |
41DAP/reference | 0.91323 | 0.326 |
42DAP/reference | 0.9805 | 0.436 |
43DAP/reference | 0.94689 | 0.159 |
47DAP/reference | 0.69463 | 0.079 |
52DAP/reference | 0.92971 | 0.179 |
57DAP/reference | 0.96066 | 0.27 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78677 | 0.09 |
17DAP/reference | 0.62854 | 0.01 |
27DAP/reference | 0.67803 | 0.048 |
39DAP/reference | 0.55954 | 0.008 |
41DAP/reference | 0.85854 | 0.118 |
42DAP/reference | 0.72054 | 0.032 |
43DAP/reference | 0.48285 | 0.011 |
47DAP/reference | 0.60352 | 0.01 |
52DAP/reference | 0.37138 | 0.003 |
57DAP/reference | 0.24844 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30304 | 0.019 |
17DAP/reference | 1.24033 | 0.112 |
27DAP/reference | 1.14316 | 0.04 |
39DAP/reference | 1.12962 | 0.018 |
41DAP/reference | 0.97636 | 0.077 |
42DAP/reference | 0.98379 | 0.671 |
43DAP/reference | 0.89568 | 0.305 |
47DAP/reference | 0.56126 | 0.006 |
52DAP/reference | 0.75105 | 0.132 |
57DAP/reference | 0.70822 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96549 | 1 |
26DAP/20DAP | 2.48364 | 0.305 |
34DAP/26DAP | 1.17372 | 1 |
51DAP/34DAP | 1.93677 | 0.081 |
52DAP/51DAP | 1.82116 | 0.037 |
53DAP/52DAP | 0.85365 | 0.329 |
55DAP/53DAP | 1.01048 | 1 |
57DAP/55DAP | 0.5336 | 0.02 |
62DAP/57DAP | 1.29282 | 0.622 |
68DAP/62DAP | 2.54703 | 0.024 |
68DAP/14DAP | 5.16156 | 0.019 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.2644 | 0.039 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 17.7627 | 0.577 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 4.7876 | 1 |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.39555 | |
1-1-2/M82 | 3.17412 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.54614 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.68756 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 8.40485 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 2.44637 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 12.835 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.7172 | 0.243 |
IL2-6/WTpooled | 1.36549 | 0.427 |
IL7-5/WTpooled | 0.97184 | 1 |
IL7-3/WTpooled | 0.6681 | 0.298 |
IL12-4/WTpooled | 1.0074 | 1 |
IL1-4/WTpooled | 0.89251 | 0.699 |
WT/WTpooled | 1.04908 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.89277 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 7.02949 | 0.921 |
DC3000/delta hrp 6h | 0.74953 | 0.937 |
DC3000/delta hrp 12h | 0.88772 | 1 |
DC3000/delta hrp 24h | 11.4366 | 0.467 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.0585 | |
DC3000 delta B/DC3000 delta AB | 1.05712 | 0.601 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.09814 | 1 |
Exp 36h | 3.48935 | 1 |
Exp 60h | 0.72609 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02348 | 1 |
Var 0h | 1.6507 | 0.936 |
Var 12h I row2-row1 | 1.12225 | 1 |
Var 12h NI row2-row1 | 1.29882 | 0.649 |
Var 36h I row2-row1 | 0.81943 | 1 |
Var 36h NI row2-row1 | 2.3499 | 0.482 |
Var 60h I row2-row1 | 0.9806 | 0.832 |
Var 60h NI row2-row1 | 1.25325 | 0.793 |
Time course 0hI-0hNI | 0.70554 | 0.063 |
Time course 12hI-12hNI | 1.1693 | 0.672 |
Time course 36hI-36hNI | 0.72651 | 0.073 |
Time course 60hI-60hNI | 0.23138 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.57283 | 0.238 |
transgenic ySAMdc/azygous control (breaker) | 0.76965 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.2375 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05071 | 0.045 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.61262 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 5.08391 | 0.14 |
Manapal/WT (break) | 2.36487 | 0.183 |
Manapal/WT (red) | 1.04352 | 1 |
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