Expression of 1-1-8.4.15.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP3.246760.76
27DAP/17DAP3.692670.945
39DAP/27DAP1.928431
41DAP/39DAP2.086280.914
42DAP/41DAP0.70261
43DAP/42DAP1.193291
47DAP/43DAP1.804120.442
52DAP/47DAP0.892670.752
57DAP/52DAP0.656250.601

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.077961
17DAP/reference0.832250.169
27DAP/reference0.834510.265
39DAP/reference0.601020.022
41DAP/reference0.503680.01
42DAP/reference0.776910.006
43DAP/reference0.648210.017
47DAP/reference0.688030.001
52DAP/reference0.485220.014
57DAP/reference0.775550.031

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.18551
27DAP/17DAP0.871830.724
39DAP/27DAP0.513770.036
41DAP/39DAP1.720010.801
42DAP/41DAP1.013970.77
43DAP/42DAP0.722610.051
47DAP/43DAP0.909960.516
52DAP/47DAP1.038780.975
57DAP/52DAP0.847080.317
57DAP/7DAP0.214180.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.177190.119
17DAP/reference1.083750.077
27DAP/reference0.990580.494
39DAP/reference0.936910.073
41DAP/reference0.913230.326
42DAP/reference0.98050.436
43DAP/reference0.946890.159
47DAP/reference0.694630.079
52DAP/reference0.929710.179
57DAP/reference0.960660.27

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.786770.09
17DAP/reference0.628540.01
27DAP/reference0.678030.048
39DAP/reference0.559540.008
41DAP/reference0.858540.118
42DAP/reference0.720540.032
43DAP/reference0.482850.011
47DAP/reference0.603520.01
52DAP/reference0.371380.003
57DAP/reference0.248440.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.303040.019
17DAP/reference1.240330.112
27DAP/reference1.143160.04
39DAP/reference1.129620.018
41DAP/reference0.976360.077
42DAP/reference0.983790.671
43DAP/reference0.895680.305
47DAP/reference0.561260.006
52DAP/reference0.751050.132
57DAP/reference0.708220.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.965491
26DAP/20DAP2.483640.305
34DAP/26DAP1.173721
51DAP/34DAP1.936770.081
52DAP/51DAP1.821160.037
53DAP/52DAP0.853650.329
55DAP/53DAP1.010481
57DAP/55DAP0.53360.02
62DAP/57DAP1.292820.622
68DAP/62DAP2.547030.024
68DAP/14DAP5.161560.019

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.26440.039

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato17.76270.577
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato4.78761
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.39555
1-1-2/M823.174121
12-2/M82N/AN/A
12-4/M821.54614
1-3/M82N/AN/A
2-1-1/M821.68756
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M828.40485
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M822.446371
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M8212.835
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.71720.243
IL2-6/WTpooled1.365490.427
IL7-5/WTpooled0.971841
IL7-3/WTpooled0.66810.298
IL12-4/WTpooled1.00741
IL1-4/WTpooled0.892510.699
WT/WTpooled1.049081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.892770.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h7.029490.921
DC3000/delta hrp 6h0.749530.937
DC3000/delta hrp 12h0.887721
DC3000/delta hrp 24h11.43660.467

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.0585
DC3000 delta B/DC3000 delta AB1.057120.601

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.098141
Exp 36h3.489351
Exp 60h0.726090.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.023481
Var 0h1.65070.936
Var 12h I row2-row11.122251
Var 12h NI row2-row11.298820.649
Var 36h I row2-row10.819431
Var 36h NI row2-row12.34990.482
Var 60h I row2-row10.98060.832
Var 60h NI row2-row11.253250.793
Time course 0hI-0hNI0.705540.063
Time course 12hI-12hNI1.16930.672
Time course 36hI-36hNI0.726510.073
Time course 60hI-60hNI0.231380.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.572830.238
transgenic ySAMdc/azygous control (breaker)0.769650.15
transgenic ySAMdc/azygous control (red)1.23750.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.050710.045

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.612620.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)5.083910.14
Manapal/WT (break)2.364870.183
Manapal/WT (red)1.043521