Expression of 1-1-8.4.15.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86943 | 0.253 |
27DAP/17DAP | 0.89015 | 0.745 |
39DAP/27DAP | 0.88018 | 0.564 |
41DAP/39DAP | 1.20759 | 0.478 |
42DAP/41DAP | 1.16646 | 0.967 |
43DAP/42DAP | 0.85861 | 0.665 |
47DAP/43DAP | 0.95205 | 0.76 |
52DAP/47DAP | 1.46251 | 0.401 |
57DAP/52DAP | 1.00213 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34898 | 0.154 |
17DAP/reference | 0.90682 | 0.368 |
27DAP/reference | 1.5003 | 0.146 |
39DAP/reference | 1.51567 | |
41DAP/reference | 1.17703 | 0.91 |
42DAP/reference | 1.05832 | 0.585 |
43DAP/reference | 0.83604 | 0.287 |
47DAP/reference | 1.01984 | 1 |
52DAP/reference | 0.25815 | |
57DAP/reference | 0.64148 | 0.036 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.81675 | 0.148 |
27DAP/17DAP | 1.03131 | 1 |
39DAP/27DAP | 1.11643 | 0.575 |
41DAP/39DAP | 0.75133 | 0.093 |
42DAP/41DAP | 1.14038 | 0.763 |
43DAP/42DAP | 0.99303 | 0.96 |
47DAP/43DAP | 0.93199 | 0.734 |
52DAP/47DAP | 1.00814 | 0.982 |
57DAP/52DAP | 0.85225 | 0.366 |
57DAP/7DAP | 0.70054 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8882 | 0.082 |
17DAP/reference | 0.91241 | 0.056 |
27DAP/reference | 0.87861 | 0.022 |
39DAP/reference | 0.94913 | 0.039 |
41DAP/reference | 0.94942 | 0.133 |
42DAP/reference | 0.89699 | 0.011 |
43DAP/reference | 0.87911 | 0.066 |
47DAP/reference | 1.28956 | 0.868 |
52DAP/reference | 0.80533 | 0.014 |
57DAP/reference | 0.8236 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02594 | 0.787 |
17DAP/reference | 1.27811 | 0.367 |
27DAP/reference | 1.51788 | 0.455 |
39DAP/reference | 0.97092 | |
41DAP/reference | 1.68087 | |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.00377 | 1 |
47DAP/reference | 2.18297 | |
52DAP/reference | 0.83306 | 0.433 |
57DAP/reference | 0.73927 | |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91952 | 0.087 |
17DAP/reference | 1.11777 | 0.627 |
27DAP/reference | 0.82472 | 0.133 |
39DAP/reference | 0.80784 | 0.01 |
41DAP/reference | 0.98445 | 0.512 |
42DAP/reference | 0.89962 | 0.134 |
43DAP/reference | 0.81492 | 0.125 |
47DAP/reference | 1.18567 | 0.655 |
52DAP/reference | 0.73619 | 0.109 |
57DAP/reference | 1.10684 | 0.954 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.99739 | 0.966 |
26DAP/20DAP | 1.10856 | 0.941 |
34DAP/26DAP | 1.08854 | 1 |
51DAP/34DAP | 0.98335 | 0.873 |
52DAP/51DAP | 1.12123 | 0.662 |
53DAP/52DAP | 0.80078 | 0.342 |
55DAP/53DAP | 0.97205 | 0.82 |
57DAP/55DAP | 1.24576 | 0.915 |
62DAP/57DAP | 1.10167 | 0.902 |
68DAP/62DAP | 0.66298 | |
68DAP/14DAP | 0.66655 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.84949 | 0.253 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.35257 | 0.267 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.83977 | |
Mature Eggplant/Ripe Tomato | 0.91024 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99916 | 1 |
1-1-2/M82 | 0.92064 | 0.958 |
12-2/M82 | 1.09213 | 1 |
12-4/M82 | 1.02501 | |
1-3/M82 | 0.96175 | 1 |
2-1-1/M82 | 1.36343 | 0.295 |
2-1/M82 | 0.96312 | 1 |
2-6/M82 | 1.02367 | 1 |
3-2/M82 | 0.97893 | 1 |
4-1-1/M82 | 1.07681 | 1 |
4-1/M82 | 0.95791 | 1 |
4-3-2/M82 | 0.84459 | 1 |
4-3/M82 | 1.12067 | 0.268 |
5-3/M82 | 1.07988 | 1 |
6-2/M82 | 1.05484 | 1 |
6-3/M82 | 0.98073 | 1 |
7-1/M82 | 1.00617 | 1 |
7-2/M82 | 1.06726 | 1 |
9-3-2/M82 | 1.07675 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.0008 | 1 |
IL2-6/WTpooled | 0.85894 | 1 |
IL7-5/WTpooled | 0.9071 | |
IL7-3/WTpooled | 1.04152 | 1 |
IL12-4/WTpooled | 1.11889 | 0.646 |
IL1-4/WTpooled | 1.18674 | |
WT/WTpooled | 1.01901 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.50623 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.14687 | 0.671 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 1.09715 | 0.553 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.89597 | |
DC3000 delta B/DC3000 delta AB | 1.17507 | 0.381 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.90776 | 1 |
Var 0h | 0.72909 | 1 |
Var 12h I row2-row1 | 1.04121 | 0.795 |
Var 12h NI row2-row1 | 0.8437 | 0.713 |
Var 36h I row2-row1 | 0.9988 | 1 |
Var 36h NI row2-row1 | 1.23784 | 1 |
Var 60h I row2-row1 | 1.54464 | 1 |
Var 60h NI row2-row1 | 1.00824 | 1 |
Time course 0hI-0hNI | 1.01332 | 1 |
Time course 12hI-12hNI | 1.03588 | 0.818 |
Time course 36hI-36hNI | 1.13098 | 0.19 |
Time course 60hI-60hNI | 1.22216 | 0.033 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.67362 | 0.059 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.863 | 0.315 |
|
|