Expression of 1-1-8.4.15.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.869430.253
27DAP/17DAP0.890150.745
39DAP/27DAP0.880180.564
41DAP/39DAP1.207590.478
42DAP/41DAP1.166460.967
43DAP/42DAP0.858610.665
47DAP/43DAP0.952050.76
52DAP/47DAP1.462510.401
57DAP/52DAP1.002130.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.348980.154
17DAP/reference0.906820.368
27DAP/reference1.50030.146
39DAP/reference1.51567
41DAP/reference1.177030.91
42DAP/reference1.058320.585
43DAP/reference0.836040.287
47DAP/reference1.019841
52DAP/reference0.25815
57DAP/reference0.641480.036

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.816750.148
27DAP/17DAP1.031311
39DAP/27DAP1.116430.575
41DAP/39DAP0.751330.093
42DAP/41DAP1.140380.763
43DAP/42DAP0.993030.96
47DAP/43DAP0.931990.734
52DAP/47DAP1.008140.982
57DAP/52DAP0.852250.366
57DAP/7DAP0.700541

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.88820.082
17DAP/reference0.912410.056
27DAP/reference0.878610.022
39DAP/reference0.949130.039
41DAP/reference0.949420.133
42DAP/reference0.896990.011
43DAP/reference0.879110.066
47DAP/reference1.289560.868
52DAP/reference0.805330.014
57DAP/reference0.82360.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.025940.787
17DAP/reference1.278110.367
27DAP/reference1.517880.455
39DAP/reference0.97092
41DAP/reference1.68087
42DAP/referenceN/AN/A
43DAP/reference1.003771
47DAP/reference2.18297
52DAP/reference0.833060.433
57DAP/reference0.73927

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.919520.087
17DAP/reference1.117770.627
27DAP/reference0.824720.133
39DAP/reference0.807840.01
41DAP/reference0.984450.512
42DAP/reference0.899620.134
43DAP/reference0.814920.125
47DAP/reference1.185670.655
52DAP/reference0.736190.109
57DAP/reference1.106840.954

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.997390.966
26DAP/20DAP1.108560.941
34DAP/26DAP1.088541
51DAP/34DAP0.983350.873
52DAP/51DAP1.121230.662
53DAP/52DAP0.800780.342
55DAP/53DAP0.972050.82
57DAP/55DAP1.245760.915
62DAP/57DAP1.101670.902
68DAP/62DAP0.66298
68DAP/14DAP0.66655

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.849490.253

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.352570.267
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.83977
Mature Eggplant/Ripe Tomato0.910241

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.999161
1-1-2/M820.920640.958
12-2/M821.092131
12-4/M821.02501
1-3/M820.961751
2-1-1/M821.363430.295
2-1/M820.963121
2-6/M821.023671
3-2/M820.978931
4-1-1/M821.076811
4-1/M820.957911
4-3-2/M820.844591
4-3/M821.120670.268
5-3/M821.079881
6-2/M821.054841
6-3/M820.980731
7-1/M821.006171
7-2/M821.067261
9-3-2/M821.076751

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.00081
IL2-6/WTpooled0.858941
IL7-5/WTpooled0.9071
IL7-3/WTpooled1.041521
IL12-4/WTpooled1.118890.646
IL1-4/WTpooled1.18674
WT/WTpooled1.019011

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.506230.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.146870.671
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h1.097150.553

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.89597
DC3000 delta B/DC3000 delta AB1.175070.381

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.907761
Var 0h0.729091
Var 12h I row2-row11.041210.795
Var 12h NI row2-row10.84370.713
Var 36h I row2-row10.99881
Var 36h NI row2-row11.237841
Var 60h I row2-row11.544641
Var 60h NI row2-row11.008241
Time course 0hI-0hNI1.013321
Time course 12hI-12hNI1.035880.818
Time course 36hI-36hNI1.130980.19
Time course 60hI-60hNI1.222160.033

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.673620.059

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.8630.315