Expression of 1-1-8.4.17.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05731 | 0.838 |
27DAP/17DAP | 1.98366 | 0.617 |
39DAP/27DAP | 0.8904 | 0.594 |
41DAP/39DAP | 1.27975 | 0.408 |
42DAP/41DAP | 1.31375 | 0.85 |
43DAP/42DAP | 1.07512 | 1 |
47DAP/43DAP | 0.96841 | 0.804 |
52DAP/47DAP | 1.0675 | 0.916 |
57DAP/52DAP | 0.77444 | 0.827 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19429 | 0.089 |
17DAP/reference | 1.04977 | 0.565 |
27DAP/reference | 1.06799 | 0.415 |
39DAP/reference | 1.06899 | 0.377 |
41DAP/reference | 1.11139 | 0.171 |
42DAP/reference | 1.14698 | 0.006 |
43DAP/reference | 0.98651 | 0.763 |
47DAP/reference | 1.09292 | 0.13 |
52DAP/reference | 1.11776 | 0.069 |
57DAP/reference | 0.9517 | 0.262 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94504 | 0.613 |
27DAP/17DAP | 1.05151 | 0.9 |
39DAP/27DAP | 1.03313 | 0.793 |
41DAP/39DAP | 1.10771 | 0.801 |
42DAP/41DAP | 1.11421 | 0.601 |
43DAP/42DAP | 1.01052 | 1 |
47DAP/43DAP | 1.03166 | 0.906 |
52DAP/47DAP | 1.06264 | 0.851 |
57DAP/52DAP | 0.99572 | 0.869 |
57DAP/7DAP | 1.09411 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93802 | 0.246 |
17DAP/reference | 1.02277 | 0.525 |
27DAP/reference | 0.91279 | 0.013 |
39DAP/reference | 0.96741 | 0.17 |
41DAP/reference | 1.06509 | 0.223 |
42DAP/reference | 1.02519 | 0.889 |
43DAP/reference | 1.02923 | 0.746 |
47DAP/reference | 1.01967 | 0.996 |
52DAP/reference | 1.15591 | 0.212 |
57DAP/reference | 1.05709 | 0.41 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24996 | 0.041 |
17DAP/reference | 1.16756 | 0.032 |
27DAP/reference | 1.17553 | 0.083 |
39DAP/reference | 1.32419 | 0.042 |
41DAP/reference | 1.32367 | 0.032 |
42DAP/reference | 1.1308 | 0.317 |
43DAP/reference | 1.18665 | 0.352 |
47DAP/reference | 1.05222 | 0.388 |
52DAP/reference | 1.42481 | 0.006 |
57DAP/reference | 1.73132 | 0.019 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89605 | 0.135 |
17DAP/reference | 1.01256 | 0.876 |
27DAP/reference | 1.03141 | 0.644 |
39DAP/reference | 0.9 | 0.018 |
41DAP/reference | 1.02249 | 0.984 |
42DAP/reference | 0.99131 | 0.816 |
43DAP/reference | 0.98721 | 0.685 |
47DAP/reference | 1.02176 | 1 |
52DAP/reference | 0.84463 | 0.25 |
57DAP/reference | 1.07223 | 0.814 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.932 | 0.997 |
26DAP/20DAP | 0.88117 | 0.317 |
34DAP/26DAP | 1.27483 | 0.542 |
51DAP/34DAP | 0.94017 | 0.667 |
52DAP/51DAP | 1.02314 | 0.776 |
53DAP/52DAP | 0.95348 | 0.807 |
55DAP/53DAP | 0.99155 | 0.894 |
57DAP/55DAP | 0.87877 | 0.506 |
62DAP/57DAP | 0.99771 | 0.994 |
68DAP/62DAP | 0.80959 | 0.406 |
68DAP/14DAP | 1.0382 | 0.785 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.8703 | 0.224 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.94622 | 0.692 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.19474 | 1 |
Mature Eggplant/Ripe Tomato | 1.60106 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02396 | 1 |
1-1-2/M82 | 0.98192 | 1 |
12-2/M82 | 1.09596 | 1 |
12-4/M82 | 1.19276 | |
1-3/M82 | 0.82384 | 0.376 |
2-1-1/M82 | 1.16625 | |
2-1/M82 | 1.40511 | |
2-6/M82 | 1.16783 | 0.405 |
3-2/M82 | 1.05456 | |
4-1-1/M82 | 1.06446 | 1 |
4-1/M82 | 1.05899 | |
4-3-2/M82 | 1.08541 | |
4-3/M82 | 0.67387 | 0.72 |
5-3/M82 | 0.93285 | 1 |
6-2/M82 | 0.9507 | 1 |
6-3/M82 | 0.99153 | 1 |
7-1/M82 | 1.19087 | 0.992 |
7-2/M82 | 0.92839 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.60709 | 0.277 |
IL2-6/WTpooled | 1.34306 | 0.456 |
IL7-5/WTpooled | 0.55224 | 1 |
IL7-3/WTpooled | 0.91362 | 1 |
IL12-4/WTpooled | 1.28602 | 0.538 |
IL1-4/WTpooled | 1.32034 | 0.426 |
WT/WTpooled | 0.9479 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.15996 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02985 | 0.921 |
DC3000/delta hrp 6h | 1.15239 | 1 |
DC3000/delta hrp 12h | 1.1431 | 1 |
DC3000/delta hrp 24h | 1.06693 | 0.347 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.05574 | 0.384 |
DC3000 delta B/DC3000 delta AB | 1.08144 | 0.503 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07151 | 1 |
Exp 36h | 1.70576 | 0.489 |
Exp 60h | 1.09666 | 0.205 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01472 | 1 |
Var 0h | 0.88969 | 0.933 |
Var 12h I row2-row1 | 1.07144 | 0.406 |
Var 12h NI row2-row1 | 0.949 | 0.906 |
Var 36h I row2-row1 | 0.90488 | 0.805 |
Var 36h NI row2-row1 | 0.90166 | 0.706 |
Var 60h I row2-row1 | 1.23156 | 0.562 |
Var 60h NI row2-row1 | 1.25128 | 0.904 |
Time course 0hI-0hNI | 1.19851 | 0.63 |
Time course 12hI-12hNI | 1.08243 | 0.615 |
Time course 36hI-36hNI | 1.08755 | 0.147 |
Time course 60hI-60hNI | 1.76661 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.1392 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 0.60362 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.88348 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.60473 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.63478 | 1 |
Manapal/WT (break) | 0.70869 | 0.333 |
Manapal/WT (red) | 0.7853 | 0.187 |
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