Expression of 1-1-8.4.17.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.057310.838
27DAP/17DAP1.983660.617
39DAP/27DAP0.89040.594
41DAP/39DAP1.279750.408
42DAP/41DAP1.313750.85
43DAP/42DAP1.075121
47DAP/43DAP0.968410.804
52DAP/47DAP1.06750.916
57DAP/52DAP0.774440.827

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.194290.089
17DAP/reference1.049770.565
27DAP/reference1.067990.415
39DAP/reference1.068990.377
41DAP/reference1.111390.171
42DAP/reference1.146980.006
43DAP/reference0.986510.763
47DAP/reference1.092920.13
52DAP/reference1.117760.069
57DAP/reference0.95170.262

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.945040.613
27DAP/17DAP1.051510.9
39DAP/27DAP1.033130.793
41DAP/39DAP1.107710.801
42DAP/41DAP1.114210.601
43DAP/42DAP1.010521
47DAP/43DAP1.031660.906
52DAP/47DAP1.062640.851
57DAP/52DAP0.995720.869
57DAP/7DAP1.094111

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.938020.246
17DAP/reference1.022770.525
27DAP/reference0.912790.013
39DAP/reference0.967410.17
41DAP/reference1.065090.223
42DAP/reference1.025190.889
43DAP/reference1.029230.746
47DAP/reference1.019670.996
52DAP/reference1.155910.212
57DAP/reference1.057090.41

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.249960.041
17DAP/reference1.167560.032
27DAP/reference1.175530.083
39DAP/reference1.324190.042
41DAP/reference1.323670.032
42DAP/reference1.13080.317
43DAP/reference1.186650.352
47DAP/reference1.052220.388
52DAP/reference1.424810.006
57DAP/reference1.731320.019

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.896050.135
17DAP/reference1.012560.876
27DAP/reference1.031410.644
39DAP/reference0.90.018
41DAP/reference1.022490.984
42DAP/reference0.991310.816
43DAP/reference0.987210.685
47DAP/reference1.021761
52DAP/reference0.844630.25
57DAP/reference1.072230.814

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.9320.997
26DAP/20DAP0.881170.317
34DAP/26DAP1.274830.542
51DAP/34DAP0.940170.667
52DAP/51DAP1.023140.776
53DAP/52DAP0.953480.807
55DAP/53DAP0.991550.894
57DAP/55DAP0.878770.506
62DAP/57DAP0.997710.994
68DAP/62DAP0.809590.406
68DAP/14DAP1.03820.785

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.87030.224

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.946220.692
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.194741
Mature Eggplant/Ripe Tomato1.60106

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.023961
1-1-2/M820.981921
12-2/M821.095961
12-4/M821.19276
1-3/M820.823840.376
2-1-1/M821.16625
2-1/M821.40511
2-6/M821.167830.405
3-2/M821.05456
4-1-1/M821.064461
4-1/M821.05899
4-3-2/M821.08541
4-3/M820.673870.72
5-3/M820.932851
6-2/M820.95071
6-3/M820.991531
7-1/M821.190870.992
7-2/M820.928390.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.607090.277
IL2-6/WTpooled1.343060.456
IL7-5/WTpooled0.552241
IL7-3/WTpooled0.913621
IL12-4/WTpooled1.286020.538
IL1-4/WTpooled1.320340.426
WT/WTpooled0.94791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.159960.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.029850.921
DC3000/delta hrp 6h1.152391
DC3000/delta hrp 12h1.14311
DC3000/delta hrp 24h1.066930.347

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.055740.384
DC3000 delta B/DC3000 delta AB1.081440.503

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.071511
Exp 36h1.705760.489
Exp 60h1.096660.205

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.014721
Var 0h0.889690.933
Var 12h I row2-row11.071440.406
Var 12h NI row2-row10.9490.906
Var 36h I row2-row10.904880.805
Var 36h NI row2-row10.901660.706
Var 60h I row2-row11.231560.562
Var 60h NI row2-row11.251280.904
Time course 0hI-0hNI1.198510.63
Time course 12hI-12hNI1.082430.615
Time course 36hI-36hNI1.087550.147
Time course 60hI-60hNI1.766610.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.13920.654
transgenic ySAMdc/azygous control (breaker)0.603620.15
transgenic ySAMdc/azygous control (red)0.883481

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.604730.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.634781
Manapal/WT (break)0.708690.333
Manapal/WT (red)0.78530.187