Expression of 1-1-8.4.17.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04753 | 0.851 |
27DAP/17DAP | 1.0518 | 1 |
39DAP/27DAP | 1.36818 | 0.229 |
41DAP/39DAP | 1.11776 | 0.67 |
42DAP/41DAP | 1.00316 | 1 |
43DAP/42DAP | 0.9886 | 0.937 |
47DAP/43DAP | 0.8577 | 0.555 |
52DAP/47DAP | 1.24313 | 0.613 |
57DAP/52DAP | 1.43641 | 0.55 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26104 | 0.024 |
17DAP/reference | 1.27669 | 0.057 |
27DAP/reference | 1.28602 | 0.063 |
39DAP/reference | 1.42044 | 0.022 |
41DAP/reference | 1.63711 | 0.015 |
42DAP/reference | 1.301 | 0.001 |
43DAP/reference | 1.17925 | 0.044 |
47DAP/reference | 1.1374 | 0.062 |
52DAP/reference | 1.37867 | 0.02 |
57DAP/reference | 0.92095 | 0.186 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.20096 | 0.871 |
27DAP/17DAP | 1.2708 | 0.909 |
39DAP/27DAP | 0.85466 | 0.594 |
41DAP/39DAP | 1.46903 | 0.284 |
42DAP/41DAP | 1.12651 | 0.708 |
43DAP/42DAP | 1.50879 | 0.014 |
47DAP/43DAP | 0.99404 | 0.896 |
52DAP/47DAP | 1.09479 | 0.823 |
57DAP/52DAP | 0.81233 | 0.436 |
57DAP/7DAP | 1.41022 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1974 | 0.069 |
17DAP/reference | 1.08828 | 0.328 |
27DAP/reference | 1.23335 | 0.026 |
39DAP/reference | 1.55392 | 0.009 |
41DAP/reference | 1.5611 | 0.011 |
42DAP/reference | 1.85394 | 0.011 |
43DAP/reference | 1.5601 | 0.014 |
47DAP/reference | 1.25438 | 0.099 |
52DAP/reference | 1.34357 | 0.007 |
57DAP/reference | 1.21885 | 0.024 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41264 | 0.035 |
17DAP/reference | 1.6803 | 0.018 |
27DAP/reference | 1.32004 | 0.027 |
39DAP/reference | 1.40362 | 0.068 |
41DAP/reference | 1.40459 | 0.006 |
42DAP/reference | 1.18187 | 0.056 |
43DAP/reference | 1.59084 | 0.012 |
47DAP/reference | 1.18418 | 0.012 |
52DAP/reference | 1.62575 | 0.007 |
57DAP/reference | 1.55385 | 0.091 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99971 | 0.75 |
17DAP/reference | 1.08142 | 0.833 |
27DAP/reference | 0.91218 | 0.257 |
39DAP/reference | 0.87742 | 0.199 |
41DAP/reference | 1.03036 | 0.826 |
42DAP/reference | 0.89247 | 0.134 |
43DAP/reference | 1.14002 | 0.608 |
47DAP/reference | 1.26255 | 0.017 |
52DAP/reference | 1.10582 | 0.649 |
57DAP/reference | 0.83593 | 0.095 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02463 | 0.966 |
26DAP/20DAP | 0.86868 | 1 |
34DAP/26DAP | 1.13487 | 1 |
51DAP/34DAP | 0.56909 | 0.061 |
52DAP/51DAP | 1.07249 | 0.821 |
53DAP/52DAP | 1.30192 | 0.623 |
55DAP/53DAP | 1.215 | 0.764 |
57DAP/55DAP | 0.98978 | 0.914 |
62DAP/57DAP | 1.03679 | 1 |
68DAP/62DAP | 0.9165 | 0.769 |
68DAP/14DAP | 0.84373 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.73977 | 0.391 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.51839 | 0.185 |
Immature Eggplant/Mature Eggplant | 0.66513 | |
Ripe Pepper/Ripe Tomato | 0.40968 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.2541 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98336 | 0.961 |
1-1-2/M82 | 0.91308 | 1 |
12-2/M82 | 1.05029 | 1 |
12-4/M82 | 1.12575 | |
1-3/M82 | 0.8935 | 0.378 |
2-1-1/M82 | 1.22706 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.07893 | |
3-2/M82 | 1.16699 | 0.402 |
4-1-1/M82 | 0.97088 | 1 |
4-1/M82 | 0.96582 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.03588 | 1 |
6-2/M82 | 0.75199 | |
6-3/M82 | 1.07323 | 1 |
7-1/M82 | 0.84467 | |
7-2/M82 | 1.00034 | |
9-3-2/M82 | 1.09039 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.22291 | |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93705 | 1 |
DC3000/delta hrp 6h | 0.54061 | |
DC3000/delta hrp 12h | 1.04618 | 1 |
DC3000/delta hrp 24h | 1.01207 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93567 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 0.84746 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.91207 | 1 |
Var 0h | 1.07696 | 0.263 |
Var 12h I row2-row1 | 0.84669 | 0.418 |
Var 12h NI row2-row1 | 0.84868 | 0.82 |
Var 36h I row2-row1 | 1.04463 | |
Var 36h NI row2-row1 | 1.16775 | |
Var 60h I row2-row1 | 0.60419 | |
Var 60h NI row2-row1 | 1.19413 | 1 |
Time course 0hI-0hNI | 1.75861 | 0.852 |
Time course 12hI-12hNI | 1.23486 | |
Time course 36hI-36hNI | 1.08033 | 0.975 |
Time course 60hI-60hNI | 0.9275 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0075 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.60107 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.11058 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.78394 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.82533 | 1 |
Manapal/WT (break) | 0.86305 | 1 |
Manapal/WT (red) | 1.383 | 0.413 |
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