Expression of 1-1-8.4.17.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.047530.851
27DAP/17DAP1.05181
39DAP/27DAP1.368180.229
41DAP/39DAP1.117760.67
42DAP/41DAP1.003161
43DAP/42DAP0.98860.937
47DAP/43DAP0.85770.555
52DAP/47DAP1.243130.613
57DAP/52DAP1.436410.55

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.261040.024
17DAP/reference1.276690.057
27DAP/reference1.286020.063
39DAP/reference1.420440.022
41DAP/reference1.637110.015
42DAP/reference1.3010.001
43DAP/reference1.179250.044
47DAP/reference1.13740.062
52DAP/reference1.378670.02
57DAP/reference0.920950.186

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.200960.871
27DAP/17DAP1.27080.909
39DAP/27DAP0.854660.594
41DAP/39DAP1.469030.284
42DAP/41DAP1.126510.708
43DAP/42DAP1.508790.014
47DAP/43DAP0.994040.896
52DAP/47DAP1.094790.823
57DAP/52DAP0.812330.436
57DAP/7DAP1.410221

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.19740.069
17DAP/reference1.088280.328
27DAP/reference1.233350.026
39DAP/reference1.553920.009
41DAP/reference1.56110.011
42DAP/reference1.853940.011
43DAP/reference1.56010.014
47DAP/reference1.254380.099
52DAP/reference1.343570.007
57DAP/reference1.218850.024

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.412640.035
17DAP/reference1.68030.018
27DAP/reference1.320040.027
39DAP/reference1.403620.068
41DAP/reference1.404590.006
42DAP/reference1.181870.056
43DAP/reference1.590840.012
47DAP/reference1.184180.012
52DAP/reference1.625750.007
57DAP/reference1.553850.091

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.999710.75
17DAP/reference1.081420.833
27DAP/reference0.912180.257
39DAP/reference0.877420.199
41DAP/reference1.030360.826
42DAP/reference0.892470.134
43DAP/reference1.140020.608
47DAP/reference1.262550.017
52DAP/reference1.105820.649
57DAP/reference0.835930.095

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.024630.966
26DAP/20DAP0.868681
34DAP/26DAP1.134871
51DAP/34DAP0.569090.061
52DAP/51DAP1.072490.821
53DAP/52DAP1.301920.623
55DAP/53DAP1.2150.764
57DAP/55DAP0.989780.914
62DAP/57DAP1.036791
68DAP/62DAP0.91650.769
68DAP/14DAP0.843730.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.739770.391

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.518390.185
Immature Eggplant/Mature Eggplant0.66513
Ripe Pepper/Ripe Tomato0.409680.293
Mature Eggplant/Ripe Tomato0.2541

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.983360.961
1-1-2/M820.913081
12-2/M821.050291
12-4/M821.12575
1-3/M820.89350.378
2-1-1/M821.22706
2-1/M82N/AN/A
2-6/M821.07893
3-2/M821.166990.402
4-1-1/M820.970881
4-1/M820.96582
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.035881
6-2/M820.75199
6-3/M821.073231
7-1/M820.84467
7-2/M821.00034
9-3-2/M821.090391

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.22291
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.937051
DC3000/delta hrp 6h0.54061
DC3000/delta hrp 12h1.046181
DC3000/delta hrp 24h1.012071

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.935671
Exp 36hN/AN/A
Exp 60h0.847460.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.912071
Var 0h1.076960.263
Var 12h I row2-row10.846690.418
Var 12h NI row2-row10.848680.82
Var 36h I row2-row11.04463
Var 36h NI row2-row11.16775
Var 60h I row2-row10.60419
Var 60h NI row2-row11.194131
Time course 0hI-0hNI1.758610.852
Time course 12hI-12hNI1.23486
Time course 36hI-36hNI1.080330.975
Time course 60hI-60hNI0.92750.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.00751
transgenic ySAMdc/azygous control (breaker)0.601070.15
transgenic ySAMdc/azygous control (red)1.110580.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.783940.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.825331
Manapal/WT (break)0.863051
Manapal/WT (red)1.3830.413