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Expression of 1-1-8.4.17.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.017450.927
27DAP/17DAP0.890070.745
39DAP/27DAP1.018460.82
41DAP/39DAP0.986150.919
42DAP/41DAP1.424210.599
43DAP/42DAP0.940830.883
47DAP/43DAP1.303470.481
52DAP/47DAP0.806580.539
57DAP/52DAP1.083240.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.026980.727
17DAP/reference0.870550.085
27DAP/reference1.152490.529
39DAP/reference0.82650.103
41DAP/reference0.806140.065
42DAP/reference1.07970.338
43DAP/reference1.044430.787
47DAP/reference1.421370.028
52DAP/reference1.53850.01
57DAP/reference1.215630.056

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.412220.124
27DAP/17DAP1.121820.826
39DAP/27DAP0.824840.377
41DAP/39DAP1.080560.735
42DAP/41DAP1.245460.651
43DAP/42DAP1.280550.014
47DAP/43DAP1.078380.901
52DAP/47DAP0.964080.884
57DAP/52DAP0.952630.598
57DAP/7DAP1.141251

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.858230.1
17DAP/reference0.946180.447
27DAP/reference0.863210.045
39DAP/reference0.769340.031
41DAP/reference0.745170.05
42DAP/reference0.944130.436
43DAP/reference0.977570.48
47DAP/reference1.054580.776
52DAP/reference0.928210.232
57DAP/reference0.966890.426

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.865040.564
17DAP/reference1.10920.806
27DAP/reference1.254230.412
39DAP/reference1.111680.912
41DAP/reference1.073651
42DAP/reference1.184660.24
43DAP/reference0.871160.277
47DAP/reference0.947870.24
52DAP/reference1.063841
57DAP/reference0.80610.099

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.096350.691
17DAP/reference0.851880.292
27DAP/reference0.780030.119
39DAP/reference0.870230.147
41DAP/reference0.902370.459
42DAP/reference1.114960.529
43DAP/reference1.035460.827
47DAP/reference0.970950.465
52DAP/reference0.899030.376
57DAP/reference1.319090.171

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.125680.966
26DAP/20DAP1.503640.2
34DAP/26DAP0.852430.596
51DAP/34DAP1.532250.047
52DAP/51DAP1.025850.965
53DAP/52DAP0.895830.631
55DAP/53DAP1.049651
57DAP/55DAP1.073720.793
62DAP/57DAP0.951080.871
68DAP/62DAP0.769240.641
68DAP/14DAP1.460520.038

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.802830.028

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.92210.487
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.53351N/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.94494N/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.90874N/A
7-2/M82N/AN/A
9-3-2/M821.578281

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.76520.243
IL2-6/WTpooled1.18640.659
IL7-5/WTpooled0.763621
IL7-3/WTpooled1.035371
IL12-4/WTpooled1.141170.557
IL1-4/WTpooled0.914370.699
WT/WTpooled0.994631

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.828480.197

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.569481
DC3000/delta hrp 24h0.858190.395

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.804690.485
DC3000 delta B/DC3000 delta AB0.855380.317

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.06861
Var 0h0.982421
Var 12h I row2-row10.991091
Var 12h NI row2-row11.136750.649
Var 36h I row2-row10.792651
Var 36h NI row2-row11.011531
Var 60h I row2-row10.945220.287
Var 60h NI row2-row11.157660.904
Time course 0hI-0hNI0.968840.863
Time course 12hI-12hNI0.968760.734
Time course 36hI-36hNI0.983610.589
Time course 60hI-60hNI0.703660.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.16490.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.195221