Expression of 1-1-8.4.17.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.254290.646
27DAP/17DAP1.419460.642
39DAP/27DAP3.231710.02
41DAP/39DAP2.416180.166
42DAP/41DAP3.140210.018
43DAP/42DAP1.689170.755
47DAP/43DAP1.6910.218
52DAP/47DAP0.683990.257
57DAP/52DAP1.678950.883

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.128290.29
17DAP/reference1.142560.653
27DAP/reference1.018370.867
39DAP/reference0.835210.342
41DAP/reference1.187920.221
42DAP/reference1.103430.03
43DAP/reference1.200460.189
47DAP/reference1.109270.937
52DAP/reference1.085570.951
57DAP/reference1.146810.195

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.06060.687
27DAP/17DAP1.219880.506
39DAP/27DAP2.291270.034
41DAP/39DAP0.427520.013
42DAP/41DAP3.467170.002
43DAP/42DAP5.435870.013
47DAP/43DAP1.101560.897
52DAP/47DAP1.130480.669
57DAP/52DAP0.613360.052
57DAP/7DAP6.957760.207

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.064260.732
17DAP/reference0.971840.447
27DAP/reference1.211030.049
39DAP/reference1.120130.186
41DAP/reference1.257650.08
42DAP/reference1.346490.037
43DAP/reference1.101660.483
47DAP/reference1.140760.659
52DAP/reference1.414340.008
57DAP/reference1.203450.125

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.858890.145
17DAP/reference0.731230.113
27DAP/reference0.78640.16
39DAP/reference0.846420.093
41DAP/reference1.075291
42DAP/reference0.963870.482
43DAP/reference0.809670.144
47DAP/reference1.018481
52DAP/reference1.029940.619
57DAP/reference0.833370.226

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.196660.244
17DAP/reference1.054510.804
27DAP/reference1.15120.467
39DAP/reference1.21520.13
41DAP/reference1.515160.05
42DAP/reference1.388640.265
43DAP/reference1.472940.043
47DAP/reference1.205581
52DAP/reference1.496060.301
57DAP/reference1.068060.902

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.399840.631
26DAP/20DAP1.321260.305
34DAP/26DAP1.109511
51DAP/34DAP1.796240.045
52DAP/51DAP0.973591
53DAP/52DAP9.255150.016
55DAP/53DAP1.665880.022
57DAP/55DAP1.177590.841
62DAP/57DAP0.533250.05
68DAP/62DAP3.16840.956
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker17.28320.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.139780.016
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.31107
12-2/M82N/AN/A
12-4/M823.71726
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.146410.125
4-1-1/M82N/AN/A
4-1/M821.733731
4-3-2/M821.019891
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.01033
7-2/M82N/AN/A
9-3-2/M821.209581

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.969871
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.93965
IL7-3/WTpooled1.57227
IL12-4/WTpooled0.999361
IL1-4/WTpooled1.579991
WT/WTpooled1.035281

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.953471

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.44436
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.82441

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.964290.92
DC3000 delta B/DC3000 delta AB1.10430.457

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.975931
Var 0h0.862880.782
Var 12h I row2-row10.948530.627
Var 12h NI row2-row11.19080.649
Var 36h I row2-row11.243290.601
Var 36h NI row2-row11.137770.482
Var 60h I row2-row10.728560.439
Var 60h NI row2-row11.184211
Time course 0hI-0hNI0.892420.294
Time course 12hI-12hNI0.986250.94
Time course 36hI-36hNI1.075330.651
Time course 60hI-60hNI1.02211

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.448580.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.936320.863