Expression of 1-1-8.4.17.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.067450.912
27DAP/17DAP1.077831
39DAP/27DAP0.791880.364
41DAP/39DAP0.998040.873
42DAP/41DAP1.20040.886
43DAP/42DAP1.029890.937
47DAP/43DAP1.263380.576
52DAP/47DAP1.179130.96
57DAP/52DAP1.08810.982

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.048760.727
17DAP/reference0.849350.169
27DAP/reference0.996190.779
39DAP/reference1.218240.174
41DAP/reference1.175520.102
42DAP/reference1.274270.005
43DAP/reference0.963820.611
47DAP/reference1.173240.119
52DAP/reference1.368850.045
57DAP/reference1.289980.038

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.044990.923
27DAP/17DAP0.931480.821
39DAP/27DAP0.997450.908
41DAP/39DAP0.796390.164
42DAP/41DAP1.121630.81
43DAP/42DAP0.851090.022
47DAP/43DAP0.975540.857
52DAP/47DAP0.996170.899
57DAP/52DAP1.21680.777
57DAP/7DAP0.777221

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.880270.066
17DAP/reference0.749370.028
27DAP/reference0.597630.01
39DAP/reference0.738610.023
41DAP/reference0.776840.054
42DAP/reference0.705870.013
43DAP/reference0.623790.016
47DAP/reference0.890180.383
52DAP/reference0.684850.019
57DAP/reference0.536750.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.83580.238
17DAP/reference1.372040.385
27DAP/reference0.776580.074
39DAP/reference0.951430.416
41DAP/reference1.024370.749
42DAP/reference1.529320.038
43DAP/reference1.240210.503
47DAP/reference1.190630.035
52DAP/reference1.367610.3
57DAP/reference0.982730.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.902120.158
17DAP/reference1.006450.839
27DAP/reference0.811220.063
39DAP/reference0.924960.328
41DAP/reference0.849480.086
42DAP/reference0.739830.016
43DAP/reference0.914780.348
47DAP/reference1.135210.543
52DAP/reference0.880480.385
57DAP/reference0.984650.633

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.105211
26DAP/20DAP0.99371
34DAP/26DAP0.910460.826
51DAP/34DAP0.826080.532
52DAP/51DAP1.099360.848
53DAP/52DAP1.363220.91
55DAP/53DAP1.71250.375
57DAP/55DAP0.859620.486
62DAP/57DAP1.128140.868
68DAP/62DAP0.821860.747
68DAP/14DAP1.375960.146

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.166270.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.874320.377
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.126541
1-1-2/M820.96498
12-2/M82N/AN/A
12-4/M821.2252
1-3/M820.693990.378
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.09083
3-2/M821.62486
4-1-1/M82N/AN/A
4-1/M821.00495
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.949580.642
6-2/M821.13519
6-3/M821.17165
7-1/M82N/AN/A
7-2/M821.06421
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.992771
IL2-6/WTpooled0.87071
IL7-5/WTpooled0.537550.25
IL7-3/WTpooled0.935091
IL12-4/WTpooled1.071060.891
IL1-4/WTpooled1.130520.426
WT/WTpooled1.138070.789

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.239790.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.046780.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.79819
DC3000/delta hrp 24h1.064760.516

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.577550.024
DC3000 delta B/DC3000 delta AB0.502230.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.102091
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.008911
Var 0h0.811020.782
Var 12h I row2-row10.756240.357
Var 12h NI row2-row10.988481
Var 36h I row2-row11.069051
Var 36h NI row2-row11.080391
Var 60h I row2-row11.088830.543
Var 60h NI row2-row11.006531
Time course 0hI-0hNI0.989041
Time course 12hI-12hNI0.959030.551
Time course 36hI-36hNI0.858540.037
Time course 60hI-60hNI0.26650.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.873721

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.002131

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.300670.15