Expression of 1-1-8.4.17.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06745 | 0.912 |
27DAP/17DAP | 1.07783 | 1 |
39DAP/27DAP | 0.79188 | 0.364 |
41DAP/39DAP | 0.99804 | 0.873 |
42DAP/41DAP | 1.2004 | 0.886 |
43DAP/42DAP | 1.02989 | 0.937 |
47DAP/43DAP | 1.26338 | 0.576 |
52DAP/47DAP | 1.17913 | 0.96 |
57DAP/52DAP | 1.0881 | 0.982 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04876 | 0.727 |
17DAP/reference | 0.84935 | 0.169 |
27DAP/reference | 0.99619 | 0.779 |
39DAP/reference | 1.21824 | 0.174 |
41DAP/reference | 1.17552 | 0.102 |
42DAP/reference | 1.27427 | 0.005 |
43DAP/reference | 0.96382 | 0.611 |
47DAP/reference | 1.17324 | 0.119 |
52DAP/reference | 1.36885 | 0.045 |
57DAP/reference | 1.28998 | 0.038 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04499 | 0.923 |
27DAP/17DAP | 0.93148 | 0.821 |
39DAP/27DAP | 0.99745 | 0.908 |
41DAP/39DAP | 0.79639 | 0.164 |
42DAP/41DAP | 1.12163 | 0.81 |
43DAP/42DAP | 0.85109 | 0.022 |
47DAP/43DAP | 0.97554 | 0.857 |
52DAP/47DAP | 0.99617 | 0.899 |
57DAP/52DAP | 1.2168 | 0.777 |
57DAP/7DAP | 0.77722 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88027 | 0.066 |
17DAP/reference | 0.74937 | 0.028 |
27DAP/reference | 0.59763 | 0.01 |
39DAP/reference | 0.73861 | 0.023 |
41DAP/reference | 0.77684 | 0.054 |
42DAP/reference | 0.70587 | 0.013 |
43DAP/reference | 0.62379 | 0.016 |
47DAP/reference | 0.89018 | 0.383 |
52DAP/reference | 0.68485 | 0.019 |
57DAP/reference | 0.53675 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8358 | 0.238 |
17DAP/reference | 1.37204 | 0.385 |
27DAP/reference | 0.77658 | 0.074 |
39DAP/reference | 0.95143 | 0.416 |
41DAP/reference | 1.02437 | 0.749 |
42DAP/reference | 1.52932 | 0.038 |
43DAP/reference | 1.24021 | 0.503 |
47DAP/reference | 1.19063 | 0.035 |
52DAP/reference | 1.36761 | 0.3 |
57DAP/reference | 0.98273 | 0.68 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90212 | 0.158 |
17DAP/reference | 1.00645 | 0.839 |
27DAP/reference | 0.81122 | 0.063 |
39DAP/reference | 0.92496 | 0.328 |
41DAP/reference | 0.84948 | 0.086 |
42DAP/reference | 0.73983 | 0.016 |
43DAP/reference | 0.91478 | 0.348 |
47DAP/reference | 1.13521 | 0.543 |
52DAP/reference | 0.88048 | 0.385 |
57DAP/reference | 0.98465 | 0.633 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10521 | 1 |
26DAP/20DAP | 0.9937 | 1 |
34DAP/26DAP | 0.91046 | 0.826 |
51DAP/34DAP | 0.82608 | 0.532 |
52DAP/51DAP | 1.09936 | 0.848 |
53DAP/52DAP | 1.36322 | 0.91 |
55DAP/53DAP | 1.7125 | 0.375 |
57DAP/55DAP | 0.85962 | 0.486 |
62DAP/57DAP | 1.12814 | 0.868 |
68DAP/62DAP | 0.82186 | 0.747 |
68DAP/14DAP | 1.37596 | 0.146 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.16627 | 0.74 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.87432 | 0.377 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.12654 | 1 |
1-1-2/M82 | 0.96498 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.2252 | |
1-3/M82 | 0.69399 | 0.378 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.09083 | |
3-2/M82 | 1.62486 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.00495 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.94958 | 0.642 |
6-2/M82 | 1.13519 | |
6-3/M82 | 1.17165 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.06421 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.99277 | 1 |
IL2-6/WTpooled | 0.8707 | 1 |
IL7-5/WTpooled | 0.53755 | 0.25 |
IL7-3/WTpooled | 0.93509 | 1 |
IL12-4/WTpooled | 1.07106 | 0.891 |
IL1-4/WTpooled | 1.13052 | 0.426 |
WT/WTpooled | 1.13807 | 0.789 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.23979 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04678 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.79819 | |
DC3000/delta hrp 24h | 1.06476 | 0.516 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.57755 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.50223 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.10209 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00891 | 1 |
Var 0h | 0.81102 | 0.782 |
Var 12h I row2-row1 | 0.75624 | 0.357 |
Var 12h NI row2-row1 | 0.98848 | 1 |
Var 36h I row2-row1 | 1.06905 | 1 |
Var 36h NI row2-row1 | 1.08039 | 1 |
Var 60h I row2-row1 | 1.08883 | 0.543 |
Var 60h NI row2-row1 | 1.00653 | 1 |
Time course 0hI-0hNI | 0.98904 | 1 |
Time course 12hI-12hNI | 0.95903 | 0.551 |
Time course 36hI-36hNI | 0.85854 | 0.037 |
Time course 60hI-60hNI | 0.2665 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.87372 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.00213 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.30067 | 0.15 |
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