Expression of 1-1-8.4.17.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.005590.811
27DAP/17DAP1.228430.91
39DAP/27DAP4.623940.037
41DAP/39DAP1.226540.619
42DAP/41DAP1.275210.691
43DAP/42DAP1.298251
47DAP/43DAP1.269580.455
52DAP/47DAP1.222430.721
57DAP/52DAP1.108371

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.038760.96
17DAP/reference1.103090.138
27DAP/reference1.185910.077
39DAP/reference1.117330.453
41DAP/reference1.335110.014
42DAP/reference1.063410.68
43DAP/reference0.941240.448
47DAP/reference1.110011
52DAP/reference1.134350.407
57DAP/reference1.124860.662

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.333850.569
27DAP/17DAP1.254290.447
39DAP/27DAP0.94350.66
41DAP/39DAP1.326490.207
42DAP/41DAP0.788880.184
43DAP/42DAP3.151010.013
47DAP/43DAP1.689180.012
52DAP/47DAP0.729690.142
57DAP/52DAP0.939540.587
57DAP/7DAP2.143520.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.883550.146
17DAP/reference0.680460.017
27DAP/reference1.342280.026
39DAP/reference0.838210.095
41DAP/reference0.850820.122
42DAP/reference1.060010.686
43DAP/reference0.869430.076
47DAP/reference1.067630.493
52DAP/reference0.979230.523
57DAP/reference0.467790.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.298140.177
17DAP/reference1.316020.285
27DAP/reference1.180610.217
39DAP/reference0.973330.539
41DAP/reference0.933890.357
42DAP/reference1.031550.843
43DAP/reference1.095090.54
47DAP/reference0.980370.543
52DAP/reference1.18510.498
57DAP/reference1.069680.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.918910.362
17DAP/reference0.845410.268
27DAP/reference0.96170.539
39DAP/reference0.674750.009
41DAP/reference0.667210.019
42DAP/reference1.433480.044
43DAP/reference1.415760.066
47DAP/reference1.042421
52DAP/reference0.905530.289
57DAP/reference0.991870.564

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.726190.355
26DAP/20DAP0.995921
34DAP/26DAP1.240741
51DAP/34DAP0.969960.807
52DAP/51DAP1.215150.503
53DAP/52DAP1.336190.537
55DAP/53DAP0.904230.604
57DAP/55DAP0.975050.821
62DAP/57DAP0.874090.681
68DAP/62DAP1.145340.931
68DAP/14DAP1.213720.236

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.728080.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.058070.014
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.06426
Mature Eggplant/Ripe Tomato0.31924

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.96979
1-1-2/M821.176821
12-2/M821.04814
12-4/M821.956371
1-3/M823.964410.248
2-1-1/M820.536690.465
2-1/M820.69255
2-6/M821.25212
3-2/M820.340340.455
4-1-1/M821.21344
4-1/M823.47855
4-3-2/M821.43611
4-3/M821.385081
5-3/M821.398251
6-2/M821.331461
6-3/M821.64316
7-1/M821.447360.992
7-2/M82N/AN/A
9-3-2/M821.997351

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.95610.321
IL2-6/WTpooled1.244350.659
IL7-5/WTpooled0.754030.559
IL7-3/WTpooled1.081641
IL12-4/WTpooled1.024271
IL1-4/WTpooled0.994811
WT/WTpooled1.143481

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.74095

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.824491
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.03784
DC3000/delta hrp 24h0.924110.618

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.92627
Var 0h1.011651
Var 12h I row2-row11.208730.473
Var 12h NI row2-row10.45511
Var 36h I row2-row10.966640.374
Var 36h NI row2-row10.794730.706
Var 60h I row2-row11.090551
Var 60h NI row2-row10.863050.69
Time course 0hI-0hNI1.171950.764
Time course 12hI-12hNI1.130050.293
Time course 36hI-36hNI1.096270.401
Time course 60hI-60hNI3.61010.359

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.447751

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.295361

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.817030.503