Expression of 1-1-8.4.17.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00559 | 0.811 |
27DAP/17DAP | 1.22843 | 0.91 |
39DAP/27DAP | 4.62394 | 0.037 |
41DAP/39DAP | 1.22654 | 0.619 |
42DAP/41DAP | 1.27521 | 0.691 |
43DAP/42DAP | 1.29825 | 1 |
47DAP/43DAP | 1.26958 | 0.455 |
52DAP/47DAP | 1.22243 | 0.721 |
57DAP/52DAP | 1.10837 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03876 | 0.96 |
17DAP/reference | 1.10309 | 0.138 |
27DAP/reference | 1.18591 | 0.077 |
39DAP/reference | 1.11733 | 0.453 |
41DAP/reference | 1.33511 | 0.014 |
42DAP/reference | 1.06341 | 0.68 |
43DAP/reference | 0.94124 | 0.448 |
47DAP/reference | 1.11001 | 1 |
52DAP/reference | 1.13435 | 0.407 |
57DAP/reference | 1.12486 | 0.662 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.33385 | 0.569 |
27DAP/17DAP | 1.25429 | 0.447 |
39DAP/27DAP | 0.9435 | 0.66 |
41DAP/39DAP | 1.32649 | 0.207 |
42DAP/41DAP | 0.78888 | 0.184 |
43DAP/42DAP | 3.15101 | 0.013 |
47DAP/43DAP | 1.68918 | 0.012 |
52DAP/47DAP | 0.72969 | 0.142 |
57DAP/52DAP | 0.93954 | 0.587 |
57DAP/7DAP | 2.14352 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88355 | 0.146 |
17DAP/reference | 0.68046 | 0.017 |
27DAP/reference | 1.34228 | 0.026 |
39DAP/reference | 0.83821 | 0.095 |
41DAP/reference | 0.85082 | 0.122 |
42DAP/reference | 1.06001 | 0.686 |
43DAP/reference | 0.86943 | 0.076 |
47DAP/reference | 1.06763 | 0.493 |
52DAP/reference | 0.97923 | 0.523 |
57DAP/reference | 0.46779 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29814 | 0.177 |
17DAP/reference | 1.31602 | 0.285 |
27DAP/reference | 1.18061 | 0.217 |
39DAP/reference | 0.97333 | 0.539 |
41DAP/reference | 0.93389 | 0.357 |
42DAP/reference | 1.03155 | 0.843 |
43DAP/reference | 1.09509 | 0.54 |
47DAP/reference | 0.98037 | 0.543 |
52DAP/reference | 1.1851 | 0.498 |
57DAP/reference | 1.06968 | 0.874 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91891 | 0.362 |
17DAP/reference | 0.84541 | 0.268 |
27DAP/reference | 0.9617 | 0.539 |
39DAP/reference | 0.67475 | 0.009 |
41DAP/reference | 0.66721 | 0.019 |
42DAP/reference | 1.43348 | 0.044 |
43DAP/reference | 1.41576 | 0.066 |
47DAP/reference | 1.04242 | 1 |
52DAP/reference | 0.90553 | 0.289 |
57DAP/reference | 0.99187 | 0.564 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.72619 | 0.355 |
26DAP/20DAP | 0.99592 | 1 |
34DAP/26DAP | 1.24074 | 1 |
51DAP/34DAP | 0.96996 | 0.807 |
52DAP/51DAP | 1.21515 | 0.503 |
53DAP/52DAP | 1.33619 | 0.537 |
55DAP/53DAP | 0.90423 | 0.604 |
57DAP/55DAP | 0.97505 | 0.821 |
62DAP/57DAP | 0.87409 | 0.681 |
68DAP/62DAP | 1.14534 | 0.931 |
68DAP/14DAP | 1.21372 | 0.236 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.72808 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.05807 | 0.014 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.06426 | |
Mature Eggplant/Ripe Tomato | 0.31924 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96979 | |
1-1-2/M82 | 1.17682 | 1 |
12-2/M82 | 1.04814 | |
12-4/M82 | 1.95637 | 1 |
1-3/M82 | 3.96441 | 0.248 |
2-1-1/M82 | 0.53669 | 0.465 |
2-1/M82 | 0.69255 | |
2-6/M82 | 1.25212 | |
3-2/M82 | 0.34034 | 0.455 |
4-1-1/M82 | 1.21344 | |
4-1/M82 | 3.47855 | |
4-3-2/M82 | 1.4361 | 1 |
4-3/M82 | 1.38508 | 1 |
5-3/M82 | 1.39825 | 1 |
6-2/M82 | 1.33146 | 1 |
6-3/M82 | 1.64316 | |
7-1/M82 | 1.44736 | 0.992 |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.99735 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.9561 | 0.321 |
IL2-6/WTpooled | 1.24435 | 0.659 |
IL7-5/WTpooled | 0.75403 | 0.559 |
IL7-3/WTpooled | 1.08164 | 1 |
IL12-4/WTpooled | 1.02427 | 1 |
IL1-4/WTpooled | 0.99481 | 1 |
WT/WTpooled | 1.14348 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.74095 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.82449 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.03784 | |
DC3000/delta hrp 24h | 0.92411 | 0.618 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.92627 | |
Var 0h | 1.01165 | 1 |
Var 12h I row2-row1 | 1.20873 | 0.473 |
Var 12h NI row2-row1 | 0.4551 | 1 |
Var 36h I row2-row1 | 0.96664 | 0.374 |
Var 36h NI row2-row1 | 0.79473 | 0.706 |
Var 60h I row2-row1 | 1.09055 | 1 |
Var 60h NI row2-row1 | 0.86305 | 0.69 |
Time course 0hI-0hNI | 1.17195 | 0.764 |
Time course 12hI-12hNI | 1.13005 | 0.293 |
Time course 36hI-36hNI | 1.09627 | 0.401 |
Time course 60hI-60hNI | 3.6101 | 0.359 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.44775 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.29536 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.81703 | 0.503 |
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