Expression of 1-1-8.4.17.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.78170.128
27DAP/17DAP0.968540.973
39DAP/27DAP1.730620.546
41DAP/39DAP0.665730.103
42DAP/41DAP0.959111
43DAP/42DAP0.933960.883
47DAP/43DAP0.688440.154
52DAP/47DAP1.459310.388
57DAP/52DAP1.086191

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.122380.197
17DAP/reference0.953970.368
27DAP/reference0.96130.406
39DAP/reference1.013580.679
41DAP/reference0.942790.267
42DAP/reference1.089990.009
43DAP/reference0.981630.745
47DAP/reference1.046690.329
52DAP/reference1.077710.663
57DAP/reference0.991450.671

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.018291
27DAP/17DAP1.193740.735
39DAP/27DAP0.976940.812
41DAP/39DAP1.271140.909
42DAP/41DAP1.095371
43DAP/42DAP0.875480.351
47DAP/43DAP1.04670.889
52DAP/47DAP0.930420.671
57DAP/52DAP1.038480.806
57DAP/7DAP0.90591

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.134780.129
17DAP/reference1.010810.688
27DAP/reference0.993250.614
39DAP/reference1.017450.351
41DAP/reference1.039260.655
42DAP/reference1.049720.233
43DAP/reference0.986620.555
47DAP/reference1.202630.067
52DAP/reference0.971420.363
57DAP/reference0.994710.67

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.141890.06
17DAP/reference1.176640.013
27DAP/reference1.471580.036
39DAP/reference1.279610.116
41DAP/reference1.221130.072
42DAP/reference1.235070.176
43DAP/reference1.10570.195
47DAP/reference1.134250.212
52DAP/reference1.010351
57DAP/reference1.003281

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.002541
17DAP/reference1.016620.932
27DAP/reference0.91390.05
39DAP/reference0.963190.199
41DAP/reference0.983050.56
42DAP/reference1.130340.34
43DAP/reference1.210450.209
47DAP/reference1.009781
52DAP/reference1.07830.483
57DAP/reference1.814060.02

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.025971
26DAP/20DAP2.109960.099
34DAP/26DAP0.737770.18
51DAP/34DAP1.065240.719
52DAP/51DAP0.924431
53DAP/52DAP0.946060.544
55DAP/53DAP0.709930.023
57DAP/55DAP1.440160.274
62DAP/57DAP1.250790.445
68DAP/62DAP1.103240.729
68DAP/14DAP1.565090.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.945270.466

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.014951
Mature Green Tomato/Ripe Tomato1.483540.03
Immature Eggplant/Mature Eggplant1.499620.053
Ripe Pepper/Ripe Tomato1.280641
Mature Eggplant/Ripe Tomato2.056440.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.027341
1-1-2/M821.104630.977
12-2/M821.176881
12-4/M821.161261
1-3/M821.300060.26
2-1-1/M821.098650.457
2-1/M820.891430.519
2-6/M821.026831
3-2/M820.955960.752
4-1-1/M820.927891
4-1/M821.28653
4-3-2/M821.214830.508
4-3/M820.978261
5-3/M821.117521
6-2/M821.005251
6-3/M821.022911
7-1/M821.103361
7-2/M821.03131
9-3-2/M820.954571

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.84362
IL2-6/WTpooled0.959751
IL7-5/WTpooled1.386420.792
IL7-3/WTpooled0.876111
IL12-4/WTpooled1.027461
IL1-4/WTpooled0.982230.834
WT/WTpooled1.022481

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.240180.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.027140.921
DC3000/delta hrp 6h0.886160.95
DC3000/delta hrp 12h0.803751
DC3000/delta hrp 24h1.105390.483

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.376250.042
DC3000 delta B/DC3000 delta AB1.38330.135

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.847021
Exp 36h1.724710.489
Exp 60h1.925310.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.030351
Var 0h0.94380.291
Var 12h I row2-row11.233160.58
Var 12h NI row2-row11.185860.34
Var 36h I row2-row11.062960.908
Var 36h NI row2-row11.1971
Var 60h I row2-row10.729910.287
Var 60h NI row2-row10.956581
Time course 0hI-0hNI0.925150.404
Time course 12hI-12hNI1.143360.385
Time course 36hI-36hNI1.339030.006
Time course 60hI-60hNI2.67630.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.123640.384
transgenic ySAMdc/azygous control (breaker)0.630540.142
transgenic ySAMdc/azygous control (red)1.21420.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.501470.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.100250.307
Manapal/WT (break)1.183490.381
Manapal/WT (red)1.356760.134